RNA id: AMCG00007712


Basic Information

Item Value
RNA id AMCG00007712
length 1424
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00007712
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27566167 ~ 27569541 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatgacagtATGGTCTCCCCTAGCATCCTTGCCCCAACATGTGTTGTGCTCTCCGATACGAGTCCTAACCCAAGTCTTCCCGAGATGGGGGTACGGCAGCTTCGACATCCCATCAGCATTCATTGCAGACGTTTCTCAGAAACATTTTCGGATGCTTCGTGCTGTAAGTCAGAGCGCAGGCGCGGCGCGGCGGCGCAGTGGGCTCTGCTCTCCGCACAGGGGCCGGGCTTGTGCTGTGTGGGTGGAAACCAGGCCTGCAGCGCATCGCAGTCTCCTCCCCGGATACTCGGTGCGCTTTCCGGGCCCATTGCTGCTTTTATCTCCGCCACGGCTTCACTTCATTCCGTTTCATGGTTCGGATCCTAGAGAGAAGGATGAAGCTGTTCTTTGCTGTCGCGATTATCGCCGGGTCGGTGATATTTCTGCTGTTCCCCAGCGGATCCGTTGCAgatgagaaaaagaaagggcCAAAAGTCACGCACAAGGATGTTGTTAAGAAGATTGAGGCGACTAAGACTGATGGCAGGGACAAGCCATTGAAAGATGTGACGATTCACAAAAGTGGGAAAATTGATGTGGAGAAACCATTTGCTGTTGCAAAGGAGTAACTAGTAATAGGTTTTTGGGTTTGGGGGTTAAAACCTAATTTCTGGAGGTGTTCCTCTGTGAGAAGTCCCCACCGCTCAAGTCCTCTGTGCTGTACTTGACACAACTGAGAAGGACACCATCTTTAAATCGAACAACAGCCTGACCACCATGCAAAAGATCACGGGTCCACTTCCAAAAGGCATTCCGAATGGGATTGTCCAACGGTTACctgcttttttaatgtaaaacaaaataaaagttcccattttttgttaaacatttgttttttgtttttaccaaaCCTACCATATCGGGACATATGCTGCAGTTATAGTTTTCGAACTCCATTAAaccactttctttttttttttttcctctctctctcaaccctGTGAAATGTAAACTCATCACACCCATCAATAAGTGGCACTTACTGACAATTAAGTGTTggtattaaaaggaaaaatttaaaaatgccacTTCTAGATGAACACCCTGCTTACTATTGCAGACAACTTTAATCAAAACCAACCTTTTAAATACAGCCCCCATATTAATTTCTCTAATGACCATACTCAAGCGATTTTAAATTTCCTATCATTTTCAGTGATATTAATCTACCTGATTCACATGTGCATAATGGAACGTTGGCAACAATTCAGTCATAATTGAACTTCGCAGAGTAGTTTGGAAGCTGCAGTTGTACCCAAAAGAGCAGATGTTTTGCACTGATGAAGTAGGGGCAAGATGTTGACAGAATATTGGCcagagattattttaaattgactgaAGTACTTGTATTTCAAACATGCCAAAGCAAAACTGCAACAATGGTT

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32286 lncRNA downstream 1458 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 2477 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 3149 27562728 ~ 27563018 (-) True G25748
TU32282 lncRNA downstream 12057 27553497 ~ 27554110 (-) True G25746
TU32258 lncRNA downstream 25231 27429757 ~ 27540936 (-) True G25726
TU32317 lncRNA upstream 92683 27662224 ~ 27666550 (-) True G25768
TU32318 lncRNA upstream 92683 27662224 ~ 27667072 (-) False G25768
TU32591 lncRNA upstream 1107299 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 1126924 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 1163223 28732764 ~ 28732994 (-) True G25985
AMCG00007713 mRNA downstream 33446 27518538 ~ 27532721 (-) True AMCG00007713
AMCG00007704 mRNA downstream 195785 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007705 mRNA downstream 231780 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007706 mRNA downstream 259036 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007699 mRNA downstream 353403 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007719 mRNA upstream 97980 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007722 mRNA upstream 303722 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007724 mRNA upstream 309719 27879260 ~ 27884397 (-) True AMCG00007724
AMCG00007726 mRNA upstream 487894 28057435 ~ 28063864 (-) True AMCG00007726
AMCG00007730 mRNA upstream 515145 28084686 ~ 28099269 (-) True AMCG00007730
TU31949 other downstream 1934575 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2301216 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3298246 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3593502 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7093463 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7299894 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9670548 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9925370 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 9998076 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10001416 37570957 ~ 37571488 (-) True G27439

Expression Profile