RNA id: AMCG00007716


Basic Information

Item Value
RNA id AMCG00007716
length 3041
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00007716
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27637217 ~ 27656565 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGGGGCTCCCCCAGGTGTATTACTTTGGGCCTTGTGGAAAATACAATGCCATGGTGCTCGAGCTGCTGGGGCCTAGCTTGGAGGATCTGTTTGACCTGTGTGACCGGACCTTCTCTCTCAAGACTGTGTTAATGATAGCCATTCAGCTGATATCGAGGATGGAGTATGTGCACTCAAAGAACTTAATCTACAGGGATGTGAAGCCAGAAAATTTCCTCATTGGACGGCAAGGCAACAAGAAAGAACACATTATTCACATCATAGACTTTGGGTTGGCAAAGGAATACATAGACCCcgaaaccaaaaaacacatccCGTACCGGGAACACAAGAGTTTGACTGGAACGGCCAGATACATGTCCATCAACACGCATCTTGGGAAAGAGCAAAGTCGGCGGGATGACCTGGAAGCCTTAGGccatatgtttatgtattttctccGGGGCAGTCTTCCTTGGCAAGGACTCAAGGCGGACACCCTCAAAGAACGATACCAGAAGATTGGAGACACGAAACGCAACACTCCCATCGAGGCTCTCTGTGAGAGCTTCCCAGAGGAGATGGCTACATACCTGAGATATGTCAGAAGGCTAGACTTCTTTGAGAAGCCGGATTACGAGTATCTGCGGACTTTGTTTACGGAGCTGTTCGAGCGCAAAGGCTACACCTTCGACTACACTTACGACTGGGTTGGCCGACAGATTCCCACGCCAGTGGGATCTGTCCATGTGGATTCAGGGACATCAGCGATCACACGAGACAGCCACGTCCATAGAGACCGGCCCTCACAGCACCAGCCGCTCCGCAATCAGGTGGTCAGTTCGACCAACGGGGAGCTTAATGCAGACGACCCTCTGGCTGTCCACTCCAACGCACCAATCACAGCGCAGGCAGAAGTGGAAGTGGTGGACGAGGCTAAgTGCTGTTGCTTCTTCAAGCGGAAACGGAAGAAGAACACTCCACGGCACAAATGATtttttggagtttttttttaaataaagtaaaataaagaagaCAACGAAAAGATCATAAACAAACGGCCTCCTGGGCGTTGTGAGTGAGCGACATGCACGTTTGATTGTTCTCATCTCTTGTTGgaaaagaaatgtttttttttttgttttttttatatacatataattgcTTTGGAACGGATGACTTGTCGCTTCACGTCTGAACCTTCTGCTGGGATAGAAGAGCTCCAACACACTCAGGCAGGATTGCACTTCTTaacttgctgtattttttttttattattatttgttcgaTTGAATTTTTGTCCAGCAGAAGCATAAGTACAGTGGGACTGCTAGGCCTccaatcagtttttatttttgccgGCTCATCTTCCACAACGATGATAGATATAGAAAAAGAACTGAAAGATAAAGTGGGGACTGAGCTTTTTGTTTGCTCCTTCCCTTTTCCTGCCCCTCCACTCTTGGGGATTCGTCAGGGCATCCCTTTGTAACCCATACAGCTGTGTCAATGGGGTGACCTCCTTGGGGAATTactattttatgttattttatttttttggtggggAAGCATAAATACTGTGAGAACTTTGAACTGCTGtctgcttttgttatttttcccttttttattttctgaatcatTGCTATTTAAGGAAATCAGGGGCTGCttgctgtcattttaattttgcttaacAGGAGCGAAGGAGGTTATTtgggttttttgtttccttctctcttcAGTTTTGCTCTTAGATGATTGTACTGGGCTCTCTTAAACAGTGATCTTATAACTCCAGTTTTCAGCTGCGAACCACAAGGCCTTTGGTGTCAGAAATTTAATATAACCTGAGTCTGTCTTACGTTAATAGAAAGTAAGAATCCATTCATAAGAATACTAAAATCTTAGTGAAGGCTCTTTGTCAATATGTAGAAGTCAAATAAGTGTCAAAGTTGAACCTCACAGTTCATCTCTGTATTCCTATATTGTTCCATGTCCTGGGGCTACAGAGAAAATAGTAACGTTGTGTGACAACTCAAGCTAGCTAATTCAAGCACTATGGCCTCTGGTATTCTCATTCTGCAAATGACTCTATTTATTCACAGAAGCGTTTGCACTACAGGTCTgtgaaaaacaaggaaataaatgGCAGAATATCATCCCAGCACATGAAAGCGAGTGCCCATTAGATGCATGTGGTAATTAGCCCCGGCCAAGCCTCATTTGAGTGGGAGCATGTGATGTCTACTTCTGTTGGGCTGGCAGTAACAAGGGGGTGGGAGGTCAAAGAGGTGTAGAGTATATACTGTGAAAGGCCCAGAGGAGGGGATAGCTGAAAGCTGAGGATTCAAgctgaaattgtatttcttgCAGTTTTTGTTTACACTGCTAGTTTTCATAACACTCCTGTATCGTCGTGGTTGGAAGCATCCAGCCATGCCTGCTACCTTGAGCCCCTTTACATAACTGGTTTGTCCAGAACTACATTTCTGAGACACTGGTTCGCTGGTCAATTGAATATTAGACTCAAAATATACATCTCCTTAAAGCCCATCCCTTCCCTTCTCTCTTGATAATGACATTGAGACTTGTGTGATCAGTAAGTTATATGAGGCTgctttaaacaaaccaaacctcTTTAAGAAATAGGGCCTTACTGCTGATGGGCAAGAATACATGCAAGGTGTCAGTGACAGTCTTGAAGAATAAGAGTTTGAGGTTATGGAAAAGCCATTGAGTCAGGTTTAATCCACTTTTTTTAACCATGTCGGTTTTGGCCATAGAGAGGCCTCCCTGAAAGCCTTGTGGATGGTTAAGCACTGTGAACACCATCTAGTGGTCCACAGGCGGATATGCATTGCCTCTTCAATTTCTATTGCTCTAAATGAGGAAGGGGTGTGGGGACACAAGATTTTGAAATTGGAGTTAAACTTACTAATGTGAAAACTCATCAGTACCAGTAAGTTTCTTTAACACATGTCATGAAACGTATAAAATCTGTGGCAACagacaaattaagaaatgtgactaacgtacgttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08958 CSNK1G; casein kinase 1, gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32289 lncRNA upstream 65726 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 67864 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA upstream 67920 27566695 ~ 27569297 (+) False G25709
TU32219 lncRNA upstream 281140 27355874 ~ 27356077 (+) True G25699
TU32194 lncRNA upstream 307015 27328947 ~ 27330202 (+) True G25677
TU32393 lncRNA downstream 413781 28070346 ~ 28078121 (+) True G25819
TU32410 lncRNA downstream 448037 28104602 ~ 28109590 (+) True G25827
TU32559 lncRNA downstream 1025606 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 1025606 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 1074565 28731130 ~ 28731401 (+) True G25984
AMCG00007715 mRNA upstream 18061 27612672 ~ 27619156 (+) True AMCG00007715
AMCG00007717 mRNA upstream 44669 27588670 ~ 27592548 (+) True AMCG00007717
AMCG00007710 mRNA upstream 70571 27553588 ~ 27566646 (+) True AMCG00007710
AMCG00007711 mRNA upstream 87254 27533469 ~ 27549963 (+) True AMCG00007711
AMCG00007709 mRNA upstream 120515 27505666 ~ 27516702 (+) True AMCG00007709
AMCG00007714 mRNA downstream 6427 27662992 ~ 27667229 (+) True AMCG00007714
AMCG00007718 mRNA downstream 17197 27673762 ~ 27679214 (+) True AMCG00007718
AMCG00007723 mRNA downstream 97648 27754213 ~ 27758823 (+) True AMCG00007723
AMCG00007721 mRNA downstream 139403 27795968 ~ 27813231 (+) True AMCG00007721
AMCG00007720 mRNA downstream 184523 27841088 ~ 27855434 (+) True AMCG00007720
TU31514 other upstream 3442736 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4443696 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5354259 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6570434 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8581084 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 427257 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 796444 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1346530 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2109263 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7954551 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile