RNA id: AMCG00007721


Basic Information

Item Value
RNA id AMCG00007721
length 3720
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00007721
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27795968 ~ 27813231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTACTAAGGGCAAGTGGGTGTTTTTGTCTCTGCAGATGGAGTCTCCGGTCTCCACGCCTGCCCCTCCCCCGCTGCACCTCCTGGCTCCGGTGGGCAACACTGACATTGCTTCCCCCTGCGAGCAGATCATGGTCCGCACACGCTCAGTGGCCGTCAACACCTCCGACGTCGCCCTGGCAACAGAGCCCGAGTGCCTGGGACCCTGCGAACCCGGGACCAGCGTCAACCTGGAGGGCATTGTGTGGCAGGAAACGGAAGATGgaaTGCTGGTAGTCAATGTCACTTGGAGGAACAAGACGTATGTGGGCACGCTCTTAGACTGTACACGACATGACTGGGCCCCACCGAGGTTCTGCGAGTCTCCCACCAGTGACCTGGAGATGCGGAATGGCCGGGGACGGGGAAAGAGAATGCGGCCCAACAGCAACACCCCTGTCAACGAGAACAGCAACTCGTCGGATAACAAGGGCAGCAGCGGCAGCAAGACTCGGGCAGGATCTAACAGTAAGGGTAGGCGAGGCAGTCAGAACTCCTCCGAGCGGCGCACCCCCCCCAACAGCAACACCGAGGACGTCAAGGCCAGCCCGTCCTCTGCCAGCAAGCGGAAGAACAAGCCGGCTTCTGACATGGAGCCCAACTCTAGCTCGGAGGACACCAAGGGGAGCAAGAGAATGCGCACCAATTCCAACAGTGGTGCTCCCCCTCCTGTCATCGCCATACCTACCATCAAAACTGAACCACTGCCCCCGCCCCTTGACCGCAATTGCCCTTCGCCTGTGCTCATCGACTGTCCGCACCCCAACTGCAACAAGAAGTACAAGCACATCAACGGCTTGAAGTACCACCAGGCCCGTGCCCACAACGATGACGATATCAAGCAGGAAATAGATGGTGACAGTGAGTATGGGGAGGACTCCACACTGCACCCGGAGCCGGGCAGCTGCAACGGGGCCTCTGTCTCCCAGAAGGGATGCCTTTCGCCAGCACGATCTATCACCCCCAAAGGCAGAGGTTTTGAAGGTCAAAGCCCATCCCCTTCTTCAGGGAAATTTAGCTCTAAGCAGTCTAGCAAAAAGAAGTCTTCCGACACCGATCAGGAAGCAGGGGGGACGCCCATGGATGGGTCTGAAGATGGGCCTTGCCTCACCGATGAGGCCAGTAATGATGGCATGGATGACAAGAAAGGCTCGGACAAAGACAAGTCCAAAAAgtcaagcagcagcagcagtagcagcagtagcagtGCCAAGTCTGATAAGTTACCACAGAAGAGTTTAAAGTCAGCCAGACCCATAGCTCCAGCTATAGCTCCCCAGCAGCTGTACACCTTCCAAACGGCTACCTTCACCACCGGAAGCCCTGGGTCTTCTCCTGGGCTTACCACTACTGTTGTTCAGGCCATGCCTAAGAGCCCCCAGCTGAAAGCCATCCAGCCCAAGCCCACCGTGATGGGAGACCCCTCAACTGTGAACCCAGCCCTGAGTAGCTCAAAGGACAAGAAAAAGAAGGATAAGAAGAAAAAGGAGGCAAGTAAGGATGCAGACAGTCCCAAACCTCCAGGGAAAGGGGGGAAACCTGAAGAAGGCAAGAGCCCCTACTCGGAGTCATCAGATCCTGGAAGCAAGAGTGACGGCCTCTTGAATGGGTCCTCGGATCCCCACCAAAGCCGCTTGGCCAGTATAAAAGCGGAGGCAGACAAGATCTACAGCTTCACAGACAATGCTCCAAGTCCGTCCATTGGTGTAGCCAGCCGGATAGACAGTGCAGGGATGGTGCAGCCCTTGACACCTCTCCATGTGGTGACACAGAATGGCGCTGACAACTCATCGGTGAAGACGAACAGTCCCGCTTACTCGGACATCTCGGATGCAGGGGAGGACGGTGAAGGCAAAGTAGACAATGTGAAGGCCAAGTCTGAGGACCAGGCCATGAGGGAAGGTGCCAAGAAGGCTTTGTTCCCTTCCCAACCCCCCAGTAAGGAGTCCCCCTATTACACAGGCTACGAGGCATATTACTCTCCCAACTACGCAAACCCCAGCCCCGGCGCTTCCAATTCCAGCTCTTCTGTACCTGAGGCACAGCCGCcgaaaataaagaaagaggaAGAGCCGGAGCCAAGTGAAGCAAAGATCAAAATGGAGCCCCAGGAAGAGCGCAAGCCGGAGATCTGTTCCTCCagccaacagcagcagcagcaacagcaacaacaacagcaacaacagcagcagcagcagcagcagcagcagcagcaacaacaacagcagcagcagcagcaacaacagcagcagcaacagcagcagcaacagcagcagcagcagcagcagcagcaacaacagcagcagcatcatcatcagcagcaacaacagcagcagcagcagccttcTGTCATCCAGCAGCGCTCCAATATGTACATGCAGCCCCTGTACTACAACCAGTATGCGTACGTCCCCCCTTACGGATATGGCGAGCAGGCCTACCACAACCACTTGATGAACAACAGCCCTGTGTACAGGCAGCAGTATGAGGAGCGCCAGAGGCATGTGGCCGAGCAGCACCGCGCTGCGGAGAAGAAGTCGGACGCCGCCCTTAAAGAGAGGGACGCATCCATGAAAGAGGAATGGAAACAGAAGGCCtccatcccccccaccctctccaaGGCCCCCAGCCTCTCGGACCTGGGCAAGCCCCTTCCTCCCAGTAAGCCAAAAGACTCTGCGTCAGAGCCAGCCAAGTCGGTCATCATCCCCAAAGTGGAGGATTCTTCAAAGATCCAGTCCCAGCAGGCCGAGGGGCTGAAGATGAAGCTGAGCGAGGGGGGCCATCACGGGAAGGAGGTTACTGAATCAAAGTCAGGCATGGAGTCCAGCAGGCAGCCAGGGATGGAGCAAACCATGTGGTACAGACAGGAGCCAGACTCCCGGCTGTGGCCCTATATCTACCCCAACAAGTACCCCGAGTCGCAGAAGCAGGAGGAAGAGCAGCAGCGCTGGAAGGAAGAGCGAGAGCGGGAAcgggaaagagagaggaagggaaaggAAGAGAGGTCGCGGCCCAAGGAGACTGCCCCCAAAGAGGAAAGCAAAGAGAGCATAGACCCCCGGACCTCCATGTCTTCCTCTGAGGAGCATAGGGGAGCGGGCAAGGAACCCCGGCCTAGCACCCACATGCAATTCTCCTCTCCCCTGGCGCAGCACCAGTCGTACATGCCCTACATGCACGGATACCCTTACGGCCAGGGCTATGACCCCAACCATCCCGGCTACAGGGGCATGCCTTCAGTCATGATGCAGAACTACCCAGggTCGTACCTGTCAGCGGGCTACTCCTTCTCCCCCTATGGCAGTAAGATGGGTGGCtcagaggaaggggagaagtCACGGGCCAGCCCCACAGTGAGCAGCAAGTCCAGCTCAGAGTCCAAAGCCCTGGACATCCTGCATCAACACGCCAGCCAGTACAAGAGCAAGTCGCCCACCGTGAGCGACAAACAGCAGCATGACCGGGAGAGGGGAGGTGGGGAGAGGGAGCGGGACGTGGACCGGCCACGCTCCTCCCCCTCACAGCGTATCATGCCCTCCCATCACCACCTGAGCTACCCCCTGCTCTCAGGACAGTATGACCTCTCCTACACCACAGgtcTCTCGTCTTCAGCCATTGTTGCCAGTCAGCAAGCCTCAACCCCCTCCCTCTACCCCCCAGCAAGGAGggAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32289 lncRNA upstream 224477 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 226615 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA upstream 226671 27566695 ~ 27569297 (+) False G25709
TU32219 lncRNA upstream 439891 27355874 ~ 27356077 (+) True G25699
TU32194 lncRNA upstream 465766 27328947 ~ 27330202 (+) True G25677
TU32393 lncRNA downstream 257115 28070346 ~ 28078121 (+) True G25819
TU32410 lncRNA downstream 291371 28104602 ~ 28109590 (+) True G25827
TU32559 lncRNA downstream 868940 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 868940 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 917899 28731130 ~ 28731401 (+) True G25984
AMCG00007723 mRNA upstream 37145 27754213 ~ 27758823 (+) True AMCG00007723
AMCG00007718 mRNA upstream 116754 27673762 ~ 27679214 (+) True AMCG00007718
AMCG00007714 mRNA upstream 128739 27662992 ~ 27667229 (+) True AMCG00007714
AMCG00007716 mRNA upstream 139403 27637217 ~ 27656565 (+) True AMCG00007716
AMCG00007715 mRNA upstream 176812 27612672 ~ 27619156 (+) True AMCG00007715
AMCG00007720 mRNA downstream 27857 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007727 mRNA downstream 105727 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007725 mRNA downstream 152115 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007733 mRNA downstream 554037 28367268 ~ 28378252 (+) True AMCG00007733
AMCG00007736 mRNA downstream 601734 28414965 ~ 28421296 (+) True AMCG00007736
TU31514 other upstream 3601487 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4602447 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5513010 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6729185 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8739835 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 270591 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 639778 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1189864 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1952597 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7797885 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066718 True 4064 mRNA 0.50 7 NC_007118.7 53498152 ~ 53532983 (+)
grasscarp (Ctenopharyngodon idella) CI01000127_00328606_00381628.mRNA False 4164 mRNA 0.51 7 CI01000127 328606 ~ 381628 (+)