RNA id: AMCG00007723


Basic Information

Item Value
RNA id AMCG00007723
length 813
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00007723
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27754213 ~ 27758823 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCTAAGCAGTGGCACTGCAGGCGGGAAAGGTGTGGACTCAAATGCGGTGGACACTTACGACAGCGGCGATGAGTGGGACATCGGCGTGGGCAATCTGATAATCGACCTTGACGCCGACCTAGAGAAGGACCAGCAGAAACTTGAGATGTCGGGCACAAAGGAAGGAGGAGGCATGGCGGCACCCCCCAGTGCTGTGGCAGCCCTGCCGGACAATATAAAATTCGTCAGCCCCGTGCCCGCTCCCCAGGGCAAGGAGAGCAAATCGAAATCCAAGCGGAGCAAGAACTCCAAAGACAACAGCAAGGCCTCAGCTGGCGATGGAGCCAAGAGAGACACTCAGGGGCGCACCCAAGGGGAAGGAGCTGGCACGGCCTCGAGTGCGGGGGTCACCGGCACCCCTGGCTCTGGGAAAGGCTCGGAAAAAAGTGGGAAGGCCTCCCGCAGTGTGCCGAGTGgtaagaaggagaaggagagtgGATCAGGGAAGAGCAAAAAGGAGAAAAGTGAGGGAGTGGCTGTGGTGGAGAAGGAGGTGGTGGCTGCAGTCCTGCCTTTGGCGGCTCGCCCCGTGCCCTTTGAGGGCACACAGAGCACGGACTTGGCTGCGGCCGAGCAGCTTGGGAATATTGCTCTTGAAGCCGCAGGGATTGTGCCAACTGTGACCATTAAAACTGAACCCGAGGATCTGGAAGGTGAATGCAGGACACTGAAGAAGATTAAAACCGAAAAGGCACATTTCAGTCACCCCCAGTCAGCTGAGAGTGCTCAAGAAGACCTGGTGACGTCCTTGCTGCATTCACGCTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32289 lncRNA upstream 182722 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 184860 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA upstream 184916 27566695 ~ 27569297 (+) False G25709
TU32219 lncRNA upstream 398136 27355874 ~ 27356077 (+) True G25699
TU32194 lncRNA upstream 424011 27328947 ~ 27330202 (+) True G25677
TU32393 lncRNA downstream 311523 28070346 ~ 28078121 (+) True G25819
TU32410 lncRNA downstream 345779 28104602 ~ 28109590 (+) True G25827
TU32559 lncRNA downstream 923348 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 923348 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 972307 28731130 ~ 28731401 (+) True G25984
AMCG00007718 mRNA upstream 74999 27673762 ~ 27679214 (+) True AMCG00007718
AMCG00007714 mRNA upstream 86984 27662992 ~ 27667229 (+) True AMCG00007714
AMCG00007716 mRNA upstream 97648 27637217 ~ 27656565 (+) True AMCG00007716
AMCG00007715 mRNA upstream 135057 27612672 ~ 27619156 (+) True AMCG00007715
AMCG00007717 mRNA upstream 161665 27588670 ~ 27592548 (+) True AMCG00007717
AMCG00007721 mRNA downstream 37145 27795968 ~ 27813231 (+) True AMCG00007721
AMCG00007720 mRNA downstream 82265 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007727 mRNA downstream 160135 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007725 mRNA downstream 206523 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007733 mRNA downstream 608445 28367268 ~ 28378252 (+) True AMCG00007733
TU31514 other upstream 3559732 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4560692 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5471255 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6687430 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8698080 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 324999 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 694186 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1244272 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2007005 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7852293 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066717 False 2798 mRNA 0.42 2 NC_007118.7 53413445 ~ 53434327 (+)
eurasian perch (Perca fluviatilis) TU36853 True 859 lncRNA 0.53 1 NC_053114.1 16131181 ~ 16132039 (+)
bowfin (Amia calva) TU36853 True 282 lncRNA 0.54 1 CM030123.1 47600820 ~ 47601101 (+)