RNA id: AMCG00007730


Basic Information

Item Value
RNA id AMCG00007730
length 2016
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00007730
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28084686 ~ 28099269 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCAGAGCTGCGTGTTGCTGGTTGCGGCCGCTTGCCTCTGCTATTCCGCCCTGCGTCTGTGGAAACAGCCGGACGGCCGAGTTTTATCCCAAAGCCACTCGCCACCGCGGCCAAAACGACCCGGTTTCCTTCTCCATCTCACAATATGGATGTCTCCCTTTGGGAACAGAAGTGCAGCGGGTCCCGCTTCAGCGCTGCACGGTGGCTCTCCTGCCTCGGCTTCTGGCTGCTGCTGGTGCCGGGGGCGCAGGGGGTCTGGCCGCTGCCCCAGCAGTTTGTCCAGACCGCCGAGAGGTACCCGCTCAGCCCGCAAGTGTTCAGCCTGGAGTACGCCAAGCAGTCCGCCGCGCAGCCCGGCTGCTCGCTCCTGGACTCGGCTTTCAAGAGATACTTCATGCTGACTTTTCCGGGTTACGGTGAAAGTTTGCGAACAGTAAGAGAGAAGCAGAATGTCTTTGCCCGTGGTGGACCCTCTTATGTAAATGCACAACCCGGCGGACTGATTGTGAATGTAAAGGTAGCTGATTGTGATGGCTACCCTGACCTGGATTCCAAAGAGAACTATATGCTAAGTGTAGCTGATGGCTGGGGGATGCTGACTGCAGACTCATATTATGTTAACAAGACAGAGGTTGCCGATTTTCCCCGTTTCCAACACCGGGGACTCCTACTGGACTCTTCCAGACACTACTTACCTCTCCACACCATCCTAAAGACACTGGATGCAATGGCCTACAGCAAGTTTAACGTGTTTCACTGGCACATTGTGGATGATCCCTCCTTCCCATACCAGAGCATCACCTTTCCTGACCTTAGTAAGAAGGGGGCCTACCACTCCCAGACACACATCTACACCATCAAAGATGTGAAGAAGGTTATAGAGCACGCCAGGATGCGTGGAATCCGAGTAATTCCTGAGTTTGACACTCCAGGCCACACCCAGTCCTGGGGACCAGGGCAGCCTGGCTTACTGACCCCATGCTACAAAGGATCGGTTCCCTCAGGGACGTTTGGCCCAGTGAACCCTGTTCTTGACTCCAGCTATCAGTTCATGAGCAGCCTCTTCAAAGAGGTGGCAATGATTTTCCCAGACTCTTACATCCATCTGGGAGGGGATGAAGTGGACTTCACCTGCTGGAAATCTAATCCAGACATTCAAAAGTTTATGTCATTGATGGGATTTGGGACTGACTACCGGAAACTGGAATCGTATTACATTGGAacACTCGTGAATATCACAATGACCCTGAAGAAGAACGCCGTGGTGTGGCAGGAAGTGTTTGACAACAACGTTCAACTGAGCCCTCTCTCTGTGGTGGAGGTGTGGAAAGGCAGCTGCTACCATTGCAGGCTGCACAGGATCACCGGGGCTGGGCTCCGTGTCATCCTGGCTTCTCCCTGGTACCTGGAACCTGGCCGCCCCGGGCAGGACTGGGTTCGGTATTACTCAGTCCGGCCTCTTGATTTCATGGGTCAGACAGTACCCAAGGACACAGTGGTGCACGTGTGGAAGGGCAACATGgagcagtacagcacagagatGCAAGACATCACAACCGGGGGGCTCAAGGTCCTGCTCTCCTCTCCCTGGTACCTCAACGTCATTTCGTACGGCCAGGACTGGCAAAAAGCATATGAAGTCAAGCCACTGAACTTCAATGGCACCGCTGAGCAGAAGAAGCTGGTGATGGGGGGAGAAGCCTGCATGTGGGGGGAGTATGTCGATGCCACCAACTTGACTCCTCGCCTGTGGCCGAGGGCGTGCGCAGTGGCTGAGCGGCTGTGGAGTGATGAGGAGCAGACCCCTAGTGCGGGCCAGGCGTACCCCCGCCTCACAGAGTTCCGCTGCAGACTGCTCAGGTATGGGCAGCCCTTGTGTCCTGGGCTGGGCTGTGATCTGAAGGAGGCTACAGAAGCTTCCTATCTCAGGGAGAGCATGCTGATCCTGTCTTTAGAGCACGAGAGCATCGGAGAAGGCGATCTATTGTTAGAGAGACATCCTCGAGCCTGA

Function

GO:

id name namespace
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K12373 HEXA_B; hexosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32318 lncRNA downstream 417614 27662224 ~ 27667072 (-) False G25768
TU32317 lncRNA downstream 418136 27662224 ~ 27666550 (-) True G25768
TU32286 lncRNA downstream 519977 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 520996 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 521668 27562728 ~ 27563018 (-) True G25748
TU32591 lncRNA upstream 577571 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 597196 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 633495 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 634843 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 795424 28894693 ~ 28898576 (-) True AMCG00007757
AMCG00007726 mRNA downstream 20822 28057435 ~ 28063864 (-) True AMCG00007726
AMCG00007724 mRNA downstream 200289 27879260 ~ 27884397 (-) True AMCG00007724
AMCG00007722 mRNA downstream 205551 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007719 mRNA downstream 411941 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007712 mRNA downstream 515145 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007728 mRNA upstream 5199 28104468 ~ 28128157 (-) True AMCG00007728
AMCG00007729 mRNA upstream 34269 28133538 ~ 28182525 (-) True AMCG00007729
AMCG00007731 mRNA upstream 84282 28183551 ~ 28194125 (-) True AMCG00007731
AMCG00007732 mRNA upstream 143048 28242317 ~ 28266497 (-) True AMCG00007732
AMCG00007738 mRNA upstream 282778 28382047 ~ 28399893 (-) True AMCG00007738
TU31949 other downstream 2453094 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2819735 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3816765 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4112021 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7611982 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6770166 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9140820 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9395642 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 9468348 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 9471688 37570957 ~ 37571488 (-) True G27439

Expression Profile