RNA id: AMCG00007732


Basic Information

Item Value
RNA id AMCG00007732
length 780
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00007732
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28242317 ~ 28266497 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAAGCGCCATACTGGCCTCTGTATACCCAGTGCCTAATCGGCTGTCCCCCATGCTGAGCAGGCACCCGGTGACAGACGGCATCAGCACAGCTCAGCGCCTGTGTCGTGAGCGCAGCTGCTTGTCAACGTCCCCATCTCTGGCTTTATCTGTTGTAAAGGATCTGTTCAGAGTCAACACTAACATCCAAACACTCTTCGCGGCCTCTCTGCCCTTCTCCGTGAGTGTGCTGACTGGTCCTCATACTCCACAGAGGAAGCTGAGGGGCTGTTTAAATGGGACCTTGACAGAGTACGCCGACAGCCGTCAGCAGCCAGGGAGATCGGGGCTGCGTTCCCGATGCTCAGGCGTGAGGCGGTTCACTCCCTTCTGGTTCTCGGTGGAGCCGACGGACACCCTGGCAGTGCGCAGTTCTCCGGCTGTGCTCAACTGCTCTGCCCAGAGCGATAGCCTGGCCAGGGTGGAGTGGAAGAAGGATGGCACCTTCCTCAACCTGGCCTCCGACGACCGCCGCCAACTCCTCGCTGACGGTTCCCTGCTCATCACTTCTGTGGTGCACTCCAAACACAACAAGCCAGATGAGGGCGTGTACCAGTGTGTGGCTTCAGTGGACACCCTGGGCACCATCAGCAGCCGCACGGCGCGTCTCAGTGTTGCCGGAGCGTTTGACAAATGTGAGAGGAGATCTGCACGACCTAAGAAGCACTTTGATAAACCCAGAGATGGCATCTTCAACATGGCCTTCATGTTTCCTAAGCTGAGGCACCtttgtgtgtga

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32318 lncRNA downstream 575245 27662224 ~ 27667072 (-) False G25768
TU32317 lncRNA downstream 575767 27662224 ~ 27666550 (-) True G25768
TU32286 lncRNA downstream 677608 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 678627 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 679299 27562728 ~ 27563018 (-) True G25748
TU32591 lncRNA upstream 410343 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 429968 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 466267 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 467615 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 628196 28894693 ~ 28898576 (-) True AMCG00007757
AMCG00007731 mRNA downstream 48192 28183551 ~ 28194125 (-) True AMCG00007731
AMCG00007729 mRNA downstream 59792 28133538 ~ 28182525 (-) True AMCG00007729
AMCG00007728 mRNA downstream 114160 28104468 ~ 28128157 (-) True AMCG00007728
AMCG00007730 mRNA downstream 143048 28084686 ~ 28099269 (-) True AMCG00007730
AMCG00007726 mRNA downstream 178453 28057435 ~ 28063864 (-) True AMCG00007726
AMCG00007738 mRNA upstream 115550 28382047 ~ 28399893 (-) True AMCG00007738
AMCG00007737 mRNA upstream 134183 28400680 ~ 28414910 (-) True AMCG00007737
AMCG00007739 mRNA upstream 159663 28426160 ~ 28429773 (-) True AMCG00007739
AMCG00007740 mRNA upstream 172358 28438855 ~ 28453586 (-) True AMCG00007740
AMCG00007743 mRNA upstream 188317 28454814 ~ 28503390 (-) True AMCG00007743
TU31949 other downstream 2610725 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2977366 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3974396 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4269652 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7769613 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6602938 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8973592 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9228414 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 9301120 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 9304460 37570957 ~ 37571488 (-) True G27439

Expression Profile