RNA id: AMCG00007733


Basic Information

Item Value
RNA id AMCG00007733
length 3835
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00007733
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28367268 ~ 28378252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAACTGAGGTCCGTTTTCAATGAAAGAGCTGATTTTGGAAGGATAGGTTTGATTCAGCTGAGCAGAAAGTCTTTCTGAGCCGGAATCACAGTTTTAGGCAAGCCTCCTCTACCCAGCAAAACCAGAGTATGTGGCGCAAAGCACTGGGGGTGGCCGTGCTGGCCCTGAGCATGGGCTACTTCTACCACTCCGACTCCGAGCTCCCTGAACGGGCTCTGCACTACCTCACCGTCACCCTCCGCAACCTGCAGGGAGCGTCCAACACTGCTGCGGTGGAGCAGACCATCTCTGCCGCCTGGGAGGCTCTGATTACCGCCCCTTCCAGGCAGTGGAGCCGGGTTGCCGTGGGGGTCAACGCCTGTGTAGATGTGGTGGTCTCGGGAGTGGGGCTCCTCCAGGCCCTTGCTGTTGATCCCGGGGTGGGGCGGGATCACGAGGTACTGCATTCCAAAGAGGACCTgaaggaggccttcatccactACATGGCGAAGGGCGCTGCTGCGGAGAGATTCTTCAGTGACAAAGAGATCTTCCAGTGGATAGCACGGGCAGCTGCAGAGTACCCTGGAGCTCAGCTCTATGTGGGTGGAAATGCTGCTCTCATTGGTCAAAAACTGGCAACATACCCCCAGTTAACGGTGCTGCTGTGTGGCCCGGTGGGGCCGAAGCTCCATGAGATGCTGGATGAGCAGATTGTGGTTCCCCCGGAGTCCCTGCAGGAGACAGACGAGTTCCACCTCATCCTGGAATACAAGGCAGGGGAGTGCTGGGGTGCGACTCAGGCCCCACACGCCAGCCGCTTCATCTTCTCCCACGACCTGACCAATGGGGAGATGAGCATGCTGGAGACCTTTGTGGCTAGCCTGGAGGAATTTCAGCCTGACCTGGTGGTGCTGTCTGGCCTACACATGATGGAGGGCCAAGGCAGGGCACTGTGGGAGGAGCGACTCAAAGAGGCTGTGATTTCCATCTCCGATATCCCCAATGAGGTCCCTATCCATCTGGAGCTGGCCAGCATGACGGACGAGGATTATATGGACCTTATCATGAGAGAGGTCCTGCCCATTGTGAACTCCATTGGACTGAACGAGCAAGAGCTGCTGTTCCTGTCACAGGCGGGCGGGGGACCCCACTCCCACATGACCTCTTGGGATGGTGTGCCAGATGTGGGCCAAGTCAGCGACATCCTCTTCTGGATCCTGCAGCAGCACGGACGCACGGACCCCGAGTCCGAAGCCGACCTCACCCGCATCCACTTCCACACCCTCGCCTACCACATCCTGGTCACCGTGGATGGCTTCTGGGCCAACCAGGTGTCTGCTGTGGCCGCTGGGGCCAGGGTAGCTGGGAGCCAGGCATGCGGGACTCCGAGCATCGATGTCGGCATGGTGGCCCTCAAAGCCCCCCTGAAGTTCCACACCTCTCACTCGGAGCCCAGGGAGACGCTGACTCTTGACCCCTCCGAGCCCGTGACCGTCTGGCACCGGGAGAACGTCTCTTTTCACCTGACGCCCGTGCTTGTCTGCAAACACGCACTAAGGACAGTTGGGCTCGGGGATGCCATTTCCGCAGAGGGACTCCTATATTCTGAAATACTTGAGCAGTAGTTGACACTGGTGAAAAAGGGATCTTGCTCTTCTCAGCAACGTGCAGGATGAGCACaaattctctctttttttttaattggtatcGGGAATGACTTGCCACATGATATTATTTTCATGGTTGTGTAGTTCGCACTGTACCACATTATGCACAGACCTTGTTTACCCTGGGCCCATTTTAAGCCCTTTTATGGTCCTAGCAGTGTAAAGCACTGTTGTTTATAGTGTAGCTGGATTATTCTTATGCTACAGATGTACACGCAGGTTAGACCAATTTAAACAGATGTACAAGATTTGTCTCGAGCTGCTACCGAGCATTTAAAACTACAGGGGGGAGGGTGTTTAAGCTGCAGTGTAGACTTCACAAAACACCAGCTTTATTTTGGGattgaattaaatgtacacaattGTGTTCTTTATGTTCTATCCTCTTTCTTTCAGTCCTATTTAAATCTTTAAGGATATCTGCTTGAGATTTGAACATACACACCTACTATATCAAGTGTGATACCCTTCTAGGATGAAACCACAACATTCAtcctggttaaaaaaaaaaaaaaaactcatgaAAAACCTTCAGCCATGCGTAACTTATCATCCTTTTCCATGGTTTAATAGACAGGGAAGACCATTTAGATTGATGACCAATGAAAATAATACCTTGTTGCGCAACTGTTAGCATAAGTTAATTTGAAGAAAGTAATAAGTCCTTACGTGTAACAGCACTGTCCAAACCTTGGTGTACGGCGTTGATGAAAGATTTCTGTCATTTTGATACTGAAGAGTGGTCTACTGTTAATGATTGGTACATTGATGATGGAGCAAGAAAAGAGTGCATCAATACAAGATGCAATTAGTCTTATTAAAtcttatttgtttatacattcTCCTCCagtaaagaatatatttatatacattactaCAAGTTAAACCGtaaggttgttttttctttttgcttccACTCCATGGTgtgtttattcaaattaaacttaACGTGTGGCATTGCCTCACCTCCAGACTACCACAGATATTGCAAATAGCATTTGAGCTCCTCTTGAGCTGTGGATTATGCAGGTATATTTATGGTagtatgttgtttttcatcCTTCGTAGTGCTCCCACTGTTTCGCTTTTAAATTCAAAAACGGTTTTCTGTACATTTGGCAGATACCTACTGTTTTTTATTCTATGTGTAACAATGTTGAATTAGCATTATTCCTGATTGGGGAATTTTggctagttttgtttttaattatttgtccatgaaaagacatttgaaaacaaacaaatcatagCTTAATTCATCTCAGTTGACCAATAATGGGATTTTCTTCTGGAGGGACAATTATTATTCAGGGATTATTTTTTTGAGCCAGGTTACACAGACAGTCTGTGGCTGTATATTCAATGCCCTTAATATTTATACTTCATGTCTTAGCTGATTTGATTGTAATGCCATCTTTAAACATTGTTCTAACCCTTTTTTAttaactgaaacacacacacatatatattaccATTGTGATGCTATGTGAAGTAAATTTTCATAAATACCACTGATAACATCATGATTAAAACCATTTACAGTTAATATAGCAGTAGACAGAATATGGTTACCCTTAAACAAGTGAAATTAGCCATTCTAAAACCTAGTTAACCAAACTGcctttttcatttactttaagGATTGAACTACCCAATTGCTCCAGCAGAGAGCAGTCTCTTCAGGTCATAGGTGAAGGAGCCCCTGTGGAATTCCAGTACATGGAAAGGCAAGTCCTTACTGCCTGTGTCTTACAAGTACTGAGAATGGTGTCTTCTGGCCCTACCTTGGTATTTCAATAAAGCTTTAACTTTGTGCTCAGAATTTATGTAGTTGGACATCAATATACACATCTGTGTGTACTGCACATCACTTTGAACGTGAGATAAATGTTGTTACTCATTCCTGAAATCCTGAAAGGAAACTTTCCATTTCTCAAATGTGTTTTGCTAGCCTTACAAGTAAAGTTGCCCTTGTAAATTAAAGCAGATCCATCCATTGCTATATTTGTATCACCTGTTTACAACACTTGTAGAATACTTACATTTGTAATCCACATGTTCTCAATAAGCTAATATTGTTACACATGTACATTAATCTAAAAGGTAAACCTAAACAACATGTCTATGCAACAAGGCATTATTAAtgcttcatatatatatatatatatatatatatatatacac

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08074 ADPGK; ADP-dependent glucokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA upstream 257678 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 289147 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 795777 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 797915 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA upstream 797971 27566695 ~ 27569297 (+) False G25709
TU32559 lncRNA downstream 303919 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 303919 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 352878 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 521806 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 696204 29074456 ~ 29082381 (+) True G26103
AMCG00007725 mRNA upstream 311411 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007727 mRNA upstream 445628 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007720 mRNA upstream 511834 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007721 mRNA upstream 554037 27795968 ~ 27813231 (+) True AMCG00007721
AMCG00007723 mRNA upstream 608445 27754213 ~ 27758823 (+) True AMCG00007723
AMCG00007736 mRNA downstream 36713 28414965 ~ 28421296 (+) True AMCG00007736
AMCG00007734 mRNA downstream 53729 28431981 ~ 28438035 (+) True AMCG00007734
AMCG00007735 mRNA downstream 60392 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007741 mRNA downstream 173568 28551820 ~ 28576250 (+) True AMCG00007741
AMCG00007746 mRNA downstream 234362 28612614 ~ 28617398 (+) True AMCG00007746
TU32400 other upstream 272527 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4172787 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5173747 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6084310 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 7300485 21060401 ~ 21066783 (+) False AMCG00007514
TU32501 other downstream 74757 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 624843 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1387576 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7232864 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9766732 38144984 ~ 38146850 (+) True G27518

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048235 True 1844 mRNA 0.57 9 NC_007136.7 2708214 ~ 2724033 (-)