RNA id: AMCG00007734


Basic Information

Item Value
RNA id AMCG00007734
length 4519
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00007734
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28431981 ~ 28438035 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATAAGGAAGAGGTTCCGACTGGGAGGATAATGAGGAAACGATAGTACATTTCATCGCATTTCTGGACTTAAGGCATTATCCGACTGAAACGATCACATATTGACGATTGAGCCGAGTGTCTTTGCCGTCTATATCGTGACCTAGTACGAGAAAGCGTACGGTCGTGTATTGTATGTTCGCTTCCTTGTGATTTTCTGCAACACAGTGCTGTGTGCAACCAAAACGAGTTGATCAACACAATAGCCTGCCCTGAGACAAAGAGATTTAGAAACTGAGAAGAGATAAATGCTGTTAATACCCTTACACCCAGCCATGAAATTAGTTAGGCGTATTTTTGTAACAGCGCATCACTTAATATAATTTCGTGACAGTAGACATTTACAATTCGTAGAAACTGATtacaacacatatacatacataaatcactATTGTTAAATATCACAGATACACGCACAGTTGATTTCGGTGTGCAAATAGTTGTTTCCTAAATGCTGGTCGAGTCGCTGTGAAAATAATAGTTGACGCCTCCAGCACCATGTTCGGGAAATCAGCGGGCTACCAGTACCAGGCTCTCCCGCAGAGAGACTCTCTGTTTCAGCCGAGCCCCGGCCTGTACGTGTCTACCGAGAGGTTCGTCCAGTATAATAACACTGCAGGACATTCATTCGACTATGTCCCCAAAATCGCGGAAAACGATTTCACAGACAAGGCTCAAGGCTGGCTTTCTTGGATGTGCAACCTGATTGTCACTTTCCTTGTGTTTCTCTTCACCATCATAACCTTCCCGGTGTCGGCTTGGTTTGTTCTCAAGGTTGTGCCCAATTACGAGAGGATCGTTGTTTTCCGACTGGGACGCATCCGCCCCCCTAAAGGGCCAGGAGTGGTGCTGGTGCTTCCCTTCATCGATCAGTGGAAGAGGGTTGACCTGCGCACAAAAGCTTTCAACATCCCGCCCTGCAAGGTGACAACCAAAGATGGGGGGCTGGTGTCAGTGGGAGCTGATATCCAGTTCCGCATCTGGAATCCAGTGATGTCAGTGGTGGCCGTGCAGGACCTGAACGCCTCCACTCGCCTCACTGCGCAGAACGCCATGACCCGCAGCCTGATCAAAAAGACTGTGCGAGAGATCCAAATGGAGAGGATCAGACTGGGGGAGAATCTAGGGGTCGACATCAACGAGAAGACGCGGCCCTGGGGGCTGGAGGTGGATCGAGTGGAACTGACTCTGGAGTCTGTGCTGAAGGCCCCCGAGGACTGTGCCTCTGTGATCATGCCTCCCTCTGTGCCCGGGCTGGAGGGGCTGACTGGACCCATTCAACAGCTGGCTATGCATTTCCTCGGCAACAACAGCATGTCTACGCCCAGCCACGGCAAAGGAGACACAGTCAGCTTTGTGGATGAGCGTGGCCCTACCGACCCTGCAGTGCTGAAGCGCCTGAGTGCCGAGGAGCTGCTGTCCACAGTGGAGGGGCTTCTGTCTGAGAGGCTGGTGAGCCAGGTGGGCGCCTGTTTCCAGTTCAACATCGGCCTCCGCGATGGGGCTCAGAACAACTACTTTGTGGATCTAAGCGAAGGTTCTGGCAAGGCTGGTGCTGGAGTCCCCGATCGCACTCCTGATGTTGTTTTGCAGATGAGTGAAGAGGACCTCGTGGCGATGCTCCAGGGCAACCTACGGCCTTTTGCAGCGTACACTGGTGGCAGACTGAAGGTTCAAGGGGACTTAAAAACTGCCATGAAGCTGGAAGAACTGATCAAAGTGATGAAGCAACAGTGATTCCTGCAGCAGGCCTTGTTAAGCTTCCAGAATGAAAAGGGAGAAGCCCCAGAAATTCCTTTCTATCAACTTCCAAATGAAGTAGGTGCAGCTATGTGAAGTGTAGAGCACTGCTGAGAAAGCTGCATCactgctttgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagatcacacacatatatagatataattaATCTGGTTTACGACAAGTCATATACAACAAGGAAGTgttaatgtttatgtattatgtacatattcattggcttcaaaaaataataattattaccaAACGTAAGAGTTATATAGTAACAAATATATAGTAATTGGAGTGCAATACACTTGATTAGTAAGCACATATGATAACAGTTAGGAGGCAGAAAGCTGAAAGATCTGTGGttctataaatgtaatttggaaAAGTGAGTCTTCACAAGGCTAGATTTGGTATCTACatatcagaaacaaataaataattattcagaTCGTAATACTTACTATGATGAGTAACAAGATAGTGGACAGTAGGAAATGGTTTGTGCCTGATGAGCTGGTACAGAATGTCCCTCCTACTGCTCCATACAGCCTTATAACAGTGGGCACCTGATGTGTGCAGGATATCTATTTCCATGTCAAAACAATAATGGAAGGCCTTTCCATGCTGTGctaaacattttgtacattttgtatcatGCACTAGTGAAAATctcttcacattttaaaagctttaatgttttgttgtgATATTAAGTATTTATGAATAGGCTATATTTCAAACTCAAAAAGGCCTACCACTGTTTTTCATAGTTGTGCTTTTTGGGGAACCTTGCTTCTTGTGTTAGGTACATTTTTTTAGAATATGTTGGGCAATATTAACAGATTTTAAGCTAGAAGTGTAAGTTGTTTCATAATACATAGTGGGTGTTTGCTGAAAAGGAACAAATGTTTTAGCCATTCAGACTGCAAAAGGTTTAGAacccagaataaaataaatgcagtacgATTAAGtaggttaaacaaaaaagtcGAATGATTGTCTTAAGTGTTTTACGATTTACAAGTTTTTCCTCggatattttctaaaatatgcacaaaacactatttaaaacaaatcacaatgtgtaaatatatttataagttATAATTATTAGAGCACTGTTGAAAGTGCaaggctgctgtgtgtttgaatggactgctattcatttttaaagaaatgtagtgtagtgtaatttGAATATTGATGTTTCAATACTGGTTTTGCCATGTctctcttttaaaatgatttcaatatattttatagttttttttcttggtcaATTTGCTTGAAGTAGATTGctgaatattttaatgatttaaatttaaGCTGTGAAATTGCATATGCTACAAGAGTGGTTCCTACTGTACCCATAATGTCAGAACATTGGTAAGAAAATGCTGCATGGCTCCCATTCCATCAAACATTGGAACAGATTTAAAAAGCATTCCTCCCCCGATCTTCAAAGGATAACCAGTAAACACTGTCACTTCAGTTTAGCTGTGCTGTTGGTTTCCATATGGGATTAGTAGAATTACAATTTACGGCGCATGGTATTCCCACATTTACTTCACTGCTGAGAAAAGGCATTGTACCCCTGACAGGGGGCTGTGGAGAGAGATGCATTAGAAGTTGGAGGTTATTTTCCTATAACGTAATTCCTTGTCCCTGACATGGCCTTCTCTGACCATGCAGCTGTTTAGAAAGAAAACATGCGTTATCTTCAAGGTTCTTTTTTCACCTCCTGCTAAACACTGTCTAAACCATTTTTTACAGTTGTGCCACCTTTGTGTTTATTACATAGGCTCTTATATGAGAGAGGTCTTGACCTGGACCTTCATAAAatttaacttgttttgtttatgaatgGGGAAACCTTGGGTGTATTGGCTTTCAAGGTGAGTATTGTGGAACTGCAACTCTTGATTGTTGGCCTAGTGCAGCGGTCCCcaaacttttgttgtttttctaccaGGCTGCTTCAAGACCAGCAGATTACCATCGCAGGTTGGGGACCACAGGCCTAGTGGAATGCTTTGCACATAAAGTGAATAAGTTGTTGCACAAGTTATTCAGTATACTGAAACAAATTGTACCTGGATACGGTATACAGATCTCCCTTGGAAGTAGTACAATATTTTggcaataaaaaaattaaatatatttcatactACCTCTCTTTGAGAACACCTGTTGCTCAATTTAGATTTAGTTGTGTGTTCTATTACAGTTACTACTCCTGCAACTACAACTGCTGCAGGGTTGATCAAATGTACTTCCAAAAtaattttttcctttattttttaatccctgACCACTCTGCTCAAGACACccctgttcagactgtacctttAATAGCCAGCCCCCTAATCAACAATGTGCCAGTATCACATTAATGTACTTCCATTATGCACTAATATGCTCCCCTCTATTGCTCCCTATTATTTAGCTACTTCTTCCTGCACATCTATTGCGTTACTGTAACTGTTGCTGTACAATTGGTAACTTTGCCTGCTTTGACACAACTGCACATAAATATTGTTGTAACTATTGCACTGTTAAGTACTGATTTTACTTAacttatactgtatattgtacttATTAGCAatcactgtaaaatgtaatgttttgtgaaaagtatttattttgtctactGTATGTGTCACCTACATACATAcctaaataaatgcaacattgcTAAACTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0032934 sterol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA upstream 322391 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 353860 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 860490 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 862628 27566695 ~ 27569353 (+) True G25709
TU32559 lncRNA downstream 244136 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 244136 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 293095 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 462023 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 636421 29074456 ~ 29082381 (+) True G26103
AMCG00007736 mRNA upstream 10685 28414965 ~ 28421296 (+) True AMCG00007736
AMCG00007733 mRNA upstream 53729 28367268 ~ 28378252 (+) True AMCG00007733
AMCG00007725 mRNA upstream 376124 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007727 mRNA upstream 510341 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007720 mRNA upstream 576547 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007735 mRNA downstream 609 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007741 mRNA downstream 113785 28551820 ~ 28576250 (+) True AMCG00007741
AMCG00007746 mRNA downstream 174579 28612614 ~ 28617398 (+) True AMCG00007746
AMCG00007747 mRNA downstream 181386 28619421 ~ 28623990 (+) True AMCG00007747
AMCG00007745 mRNA downstream 199861 28637896 ~ 28646093 (+) True AMCG00007745
TU32400 other upstream 337240 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4237500 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5238460 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6149023 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 7365198 21060401 ~ 21066783 (+) False AMCG00007514
TU32501 other downstream 14974 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 565060 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1327793 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7173081 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9706949 38144984 ~ 38146850 (+) True G27518

Expression Profile