RNA id: AMCG00007736


Basic Information

Item Value
RNA id AMCG00007736
length 2048
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00007736
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28414965 ~ 28421296 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTCTCTTTGGTTCCGACCCGGCTAAATTACATGGATGCAGCATGAGGATGTGGTCGGTGTACGGTGACGTCAGCGGGTTGTCATTGCCAGGACCGACGTTGCAGCAATGGAGGAAGTAAGAGACAGTGAAGTTGCCAAGCTCGTTGTAAGCGGAGACCCTCTGACTGTGATTGAAGATGACAAGCCCTATGCAGAGCTGTGGATGGGTGCCCACCCTAAAGGAGATGCTCTCATCAAAGATAATAGGATTTCCCAGAGGACTCTGGGGCAGTGGATAGCAGATTATCCAGGCTGCTTGGGATCAAAGGTCAAGGATACATTCCAGGGACAGCTGCCCTTTCTGTTCAAAGTTCTCTCTGTTAACCTTGCACTGTCCGTCCAGGCCCATCCCAACAGGGAATTAGCAGTGAGGCTTCACGCTCAGTTTCCAGAGCACTATCCAGATAGCAATCATAAGCCAGAAATGGCCATCGCTCTAACTCCATTCGAGGGTCTCTGTGGCTTCCGACCCGTGGAAGAGATTGTAGGCTTTCTGAAATCGGTGCCCGAGTTCCATGCTTTGGTGGGAAACGAGGCTGCGGAGGAGCTGCAGAGCAGTGTGGGGGATGCAGGCAGGGTGTCAGAGGCTCTGAAGAAATGCTTCACCAGGATGATGAACTgtgagaaaaaagtatttgttgaCCAGCTCAACATGCTAGTGAAAAGAGTATCTGAGGAAGCGGCTGCAGGAAAAGACACATCAGGAAGTAATGGGGACCTGTTGCTACGGTTACACTCACAGTTTCCAGGGGATATTGGCTGCTTCTCCATCTACTTCCTCAACCGGATAATGCTGGAGCCAGGGGAAGCCATGTTCCTGGGGGCCAATGAGCCTCACGCCTATTTGTATGGAGATTGCATTGAGTGTATGGCCTGCTCTGACAACACTGTGCGAGCTGGGCTGACACCCAAGTACATTGACGTGAGCACCCTTTGCGAGATGCTGAATTACTCTCCTGCCCCAGCCAGCTCCAAAATCTTCCCTTCTGTCCGAGACGCCTCTGATCCATGTGTCTTCCTCTATGACCCCCCTGTCCCCGACTTCACCGTCATGAGGATCCAGATCCCCGGATCAGTGAAGCAGTACACTGTGGCTCCCATCGACTGCGCTGGGATCCTGCTGGTGGTGACTGGAGAGGCCACCGCTGCCTCGGCCGCCGCCCTCTCTGACATGGCTCTCAGGAGGGGTTCTGTGCTCTTCATCTCAGCCAATGAGAGTGTGGCACTGCACATAACCTCCCCTGCCGGCATGCTGCTGTTCCGGGCCTGCTGCGTCTTGTAACCCCTTCCAACCCCCTGCCTCAACCCTAAGGGACCTCTAGTACCCCCAAACTGGGCTGCTCTGGCTCTAGTTAGGTAGCATTAGTCTAGCTGAGGAGCCTGGCTGAATTTTATCCTAGAAACTGTGACACTGTCATCATACAGTCATACAGTAGAACTCAGTTCATATcatatgtacaatatgtatgtatgtttactACTTTAAGTACATGAGAAGAATATGCTGCACTAAATTGTCGGAAgaagggacttttttttttaataatgcaagcAGCCTGggtttgattatttttggaATGGAAGTTTATTTATAGGTCTCCTTGGTATGCTTGCTACACTCTATCCCTGTTATAGGAGTAACACCTCTCTGTTATTTCCTTTCTTGTTCATAAAAATAGTCCAGATTGCTGTGCTTATCAAACTGACTTTAATATTGAGGTGCAAACTTAAAACTCATGAGATTACAACAAAGAAAAGAtaatattttccttgttttatttccttactCAGTGCCTGACCTCTGCAAAGAGTAGGTCCTCCAGCCCCCCCTACAGTCTAAACAGGGTAGCTGTATGCATGGACACCTGATTGCATTagcttaataaattacaattgcTCCTTACCtctcaacaaattacattaatgaacAAAGTGGTTGCTTCTCAGTTGGTTGATCAGGCAGGCCTGTATAActgaataaaattatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K01809 manA, MPI; mannose-6-phosphate isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA upstream 305375 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 336844 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 843474 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 845612 27566695 ~ 27569353 (+) True G25709
TU32559 lncRNA downstream 260875 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 260875 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 309834 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 478762 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 653160 29074456 ~ 29082381 (+) True G26103
AMCG00007733 mRNA upstream 36713 28367268 ~ 28378252 (+) True AMCG00007733
AMCG00007725 mRNA upstream 359108 27965346 ~ 28055857 (+) True AMCG00007725
AMCG00007727 mRNA upstream 493325 27918958 ~ 27921640 (+) True AMCG00007727
AMCG00007720 mRNA upstream 559531 27841088 ~ 27855434 (+) True AMCG00007720
AMCG00007721 mRNA upstream 601734 27795968 ~ 27813231 (+) True AMCG00007721
AMCG00007734 mRNA downstream 10685 28431981 ~ 28438035 (+) True AMCG00007734
AMCG00007735 mRNA downstream 17348 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007741 mRNA downstream 130524 28551820 ~ 28576250 (+) True AMCG00007741
AMCG00007746 mRNA downstream 191318 28612614 ~ 28617398 (+) True AMCG00007746
AMCG00007747 mRNA downstream 198125 28619421 ~ 28623990 (+) True AMCG00007747
TU32400 other upstream 320224 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4220484 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5221444 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6132007 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 7348182 21060401 ~ 21066783 (+) False AMCG00007514
TU32501 other downstream 31713 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 581799 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1344532 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 7189820 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9723688 38144984 ~ 38146850 (+) True G27518

Expression Profile