RNA id: AMCG00007738


Basic Information

Item Value
RNA id AMCG00007738
length 1791
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00007738
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28382047 ~ 28399893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAACCTTGGAAACGGACAACTTCCTGGGGCtcagtgaaatgaaaatggCGGAGGAAAAACCCCAGACGGATCTTCAGCTTCCGGTGGCCACAGAAAACAAGAAGCCCCGTCCcaaaaaagCTCCAGAGCTTCCCATTCTGGAACGGAGGAACTGGCTGATCCATCTCCACTACATCCGGAAAGATTATGAAACCTGCAAGGCAATTATCAAAGAACAGCTGCAGGAGACACAAGGAATGTctttagTACTGCGTCTCGAGGGGAAGATTCAGCAGTCTCTGGAGCTGTTTCAGAGCTGTGCACTCCTCAATCCGAGAAGCTCAGACAACCTGAAACAAGTAGCGCGATCTCTttttctaCTTGGAAAACACAAGGCTGCGATTGAAGTTTACAATGAAGCTGCTAAACTCAATCAGAAGGACTGGGAGATCAGCCACAACCTTGGTGTGTGCTACATGTATCTGAAAGACTTCAAAAATgCTCATGAGCAGTTGAATTCTGCTTTGCAGCTAAATAAACATGATTTGACATTTATGATGCTGGGAAAGATCCACTTGCTGGAAGGAGACACTGAAAAGGCAATTGATGTCTATAAAAAGGCAATTGAATTTTCACCCGAGAACACTGATCTACTGACAACACTTGGATTACTATATCTGCAGcTCGGAATCTATCAAAAGGCATTTGAACATCTTGGTAATGCCCTTACCTATGACCCCAACAACTATAAGGCTATCCTGGCAGCAGGCAGTATGATGCAGACTCACGGAGATTTCGATGTGGCCATGACCAAGTACCGTGTGGCCGCCTGTGCCGTGCCCGAGAGTCCTCCTCTCTGGAACAACATAGGAATGTGCTTCTTTGGTAAAAAGAAGTATGTTGCGGCTATCAGTTGTTTGAAAAGAGCCAACTACCTGGCTCCATTTGACTGGAAAATTCTGTATAACCTGGGGTTGGTGCATCTCACCATGCAGCAGTACGCCTCGGCCTTCCACTTCCTCAGTGCTGCCATCAACCTCCAGCCGAAGATGGGCGAGCTCTACATGCTGCTGGCTGTGGCCCTGACTAATCTGGAAGACATAGAGAATGCCAAGAGATCATATGAGCAAGCCGTGTCTTTGGACCAATCCAACCCACTGGTCAATCTGAACTTTGCCATCCTGCTCTACAACCAAGGGGATAAGAAGGGGGCCTTGCAGCAGTATCAGGAGATGGAGAAGAAAGTGAACAAGCTGAAGGAAAGCAGCAGTGTTACTGAGTTTGATCCTGAGCTTATAGAAATGGCTCAGAAGATGGGAGCAGCACTGCAGGTGGGAGAGAGCCTGGTGTGGACAAAGCCAGCCAAGGACTCCAAATCCAAGCAGCGTGCGGCTGCCCCCAGCAAGCCAGCCAGCTCCCAGCAGCCCCTGGGCTCTAACCAGGCATTAGGGCAGGCCATGTCCTCTGCTGCTGGGTACAGCAAGAGCATACAGCTATCAGCAGGCGGTGCAGTCACAGGCCTGCAGAAGCCCCCATCTTTGCCCCTGGAGCCAGAGCCCTCTGCTGAGACGGCGCCTGCAGAGCCCTCGACCCCCACAGAGTCTAAAGACAGGAAGAAGGGCAAGAACAAGATGGCAGCCGAATAGAACCAGGTGGCCTATTCCGCTTCCCACGTACCATTGCACAGGGGATGCACTGAcacttttagttttatttatttatttatgtatttatttattctcattcattttaatgttttcatatatatatacactcacctaaaggattattaggaacacctgttcaatttc

Function

GO:

id name namespace
GO:0090245 axis elongation involved in somitogenesis biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0046154 rhodopsin metabolic process biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16531 BBS4; Bardet-Biedl syndrome 4 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32318 lncRNA downstream 714975 27662224 ~ 27667072 (-) False G25768
TU32317 lncRNA downstream 715497 27662224 ~ 27666550 (-) True G25768
TU32286 lncRNA downstream 817338 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 818357 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 819029 27562728 ~ 27563018 (-) True G25748
TU32591 lncRNA upstream 276947 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 296572 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 332871 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 334219 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 494800 28894693 ~ 28898576 (-) True AMCG00007757
AMCG00007732 mRNA downstream 115550 28242317 ~ 28266497 (-) True AMCG00007732
AMCG00007731 mRNA downstream 187922 28183551 ~ 28194125 (-) True AMCG00007731
AMCG00007729 mRNA downstream 199522 28133538 ~ 28182525 (-) True AMCG00007729
AMCG00007728 mRNA downstream 253890 28104468 ~ 28128157 (-) True AMCG00007728
AMCG00007730 mRNA downstream 282778 28084686 ~ 28099269 (-) True AMCG00007730
AMCG00007737 mRNA upstream 787 28400680 ~ 28414910 (-) True AMCG00007737
AMCG00007739 mRNA upstream 26267 28426160 ~ 28429773 (-) True AMCG00007739
AMCG00007740 mRNA upstream 38962 28438855 ~ 28453586 (-) True AMCG00007740
AMCG00007743 mRNA upstream 54921 28454814 ~ 28503390 (-) True AMCG00007743
AMCG00007742 mRNA upstream 146859 28546752 ~ 28549546 (-) True AMCG00007742
TU31949 other downstream 2750455 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3117096 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4114126 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4409382 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7909343 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6469542 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8840196 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9095018 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 9167724 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 9171064 37570957 ~ 37571488 (-) True G27439

Expression Profile