RNA id: AMCG00007740


Basic Information

Item Value
RNA id AMCG00007740
length 870
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00007740
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28438855 ~ 28453586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGAGGAAGAGCTGCATCTCGGTCTCCGCGATCCTGCGGCCCAGGCACTGGCGAGGGCCGAAGCCAAAGCCGAGGCTCCTGAAGTAGCTGTTCTCACCTCTGAGCCAGCGGGAGGGCCGGTACTGCTCTGGCCTGGGGAACACACTGGGACTGCGGCCCATAGCATACAGCCCCAGCTGCACCAGTGTCTGTACACACACAACCAGCCACGTGCTCTGCTGTCTCCACTTACCCTGGCTAAAGATGCCATCCCAGGCATCCACATGGTCCCTCCACACTTTGGCACCCACTCTGCGCAGCAGGCTGGGGGGAATATACAACATGGGCGAGGTGGTCTTGAACATCAGGGTGATGCATTCGATGAAGTGCTGTGCCTCGGGATCGATGTAGTCATGCATGAGCCCCAGCCGCTCCCCGTACAGCACAGAGCTCACCGCTGGTtcaggggagacagagagacagacagacagggggaGATGGAAGTCAACACAAGAGAACCACAAGGACAGAGGCAAGCTGACCGCTGTATCCAGAACATTTACAGACAGCTGCGTCAGGCCCCCTCCAGTGATGGGAAGTACCCCGGGGTCCTAGCCAGCCTGCTGATGCTGGACAAACTGTCTATCGAAGATATCAAGGCCAGTGTGACAGAGTTGATGGCAGGAGGGGTGGATACGACCTCTATCACTTTGCTTTGGACACTGTATGAACTGGCCAGACACCCTGAGCTCCAGGAGGAACTGCGGGCCGAGATCCAGGCAGCCAGGGCTTCGTGTCAAGGAGACAAGGTCCAGATGTTAAAGATGTTTCCCGGAATCTCCATGAAGGCTCTGACGGCCCTGCTGATTTCGGGAGAGGTGCTCTGA

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0008207 C21-steroid hormone metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function
GO:0008386 cholesterol monooxygenase (side-chain-cleaving) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32318 lncRNA downstream 771783 27662224 ~ 27667072 (-) False G25768
TU32317 lncRNA downstream 772305 27662224 ~ 27666550 (-) True G25768
TU32286 lncRNA downstream 874146 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 875165 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 875837 27562728 ~ 27563018 (-) True G25748
TU32591 lncRNA upstream 223254 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 242879 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 279178 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 280526 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 441107 28894693 ~ 28898576 (-) True AMCG00007757
AMCG00007739 mRNA downstream 9082 28426160 ~ 28429773 (-) True AMCG00007739
AMCG00007737 mRNA downstream 23945 28400680 ~ 28414910 (-) True AMCG00007737
AMCG00007738 mRNA downstream 38962 28382047 ~ 28399893 (-) True AMCG00007738
AMCG00007732 mRNA downstream 172358 28242317 ~ 28266497 (-) True AMCG00007732
AMCG00007731 mRNA downstream 244730 28183551 ~ 28194125 (-) True AMCG00007731
AMCG00007743 mRNA upstream 1228 28454814 ~ 28503390 (-) True AMCG00007743
AMCG00007742 mRNA upstream 93166 28546752 ~ 28549546 (-) True AMCG00007742
AMCG00007744 mRNA upstream 125553 28579139 ~ 28581190 (-) True AMCG00007744
AMCG00007750 mRNA upstream 142409 28595995 ~ 28612241 (-) True AMCG00007750
AMCG00007749 mRNA upstream 170502 28624088 ~ 28637306 (-) True AMCG00007749
TU31949 other downstream 2807263 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3173904 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4170934 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4466190 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 7966151 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6415849 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8786503 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 9041325 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 9114031 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 9117371 37570957 ~ 37571488 (-) True G27439

Expression Profile