RNA id: AMCG00007745


Basic Information

Item Value
RNA id AMCG00007745
length 3738
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00007745
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28637896 ~ 28646093 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCTGCGCTAGGACAGGAACAGCATCAGTTGTGTTGTGTGggtctgaatgaaaataaagagagaaacatCAATGCACAGATTTTCGGTTTTAGGTTTACATAGCTGTGATTCGTATGATAAGTGTCGTATGCTGTCGTCGTCGTGCTCTAGGGAGTCGTATGCCGAACCTTGAGTAAAAAAGAGAGATTTAAAGAACTTCCCTCCTGACCCAACCCAGAAATGACAACATCAGTGTTTTTCGGCTGTACGTTCATCGCTTTCGGCCCAGCGATCGCATTGTTCGTCTTCACGATTGCTAGGGACCCCCTGCGGGTCATCTTTCTGATTGCCGGAGCTTTTTTCTGGCTGGTGTCGCTACTGCTGTCCTCACTGGTGTGGTTCATTGCTGTGCAGATCAGCAACAAAGAAAATGCCTCCCAGCAGAAAGGACTCCTAATATTCGGGGTGGTGctgtctgtgctgctgcaggAAACCTTCCGCTTCGGTTACTACAAGCTGCTGAAGAAAGCAAATGAAGGTTTGCTGGCTCTCAGTCAAGAAGATGCAATGCCCATTTCAATACGACAGCTAGCATATGTGTCTGGCCTAGGGTTTGGCTTCATGAGTGGAGCCTTCTCAGTCGCGAACATCCTGGCAGACTCCTTCGGCCCGGGCACAGTGGGCATTCATGGAGATTCGCAGCACTATTTCATATCCTCAGccTTCATGACTATGGCTATCATCTTGCTTCACATGTTCTGGGGAGTGGTGTTCTTTGATGCCTGCGAGAAGAAGAGGTGGTGGTCTGTGGCTTTAGTTGTGCTGAGCCACCTGCTTGTGTCCTGCCTGTCATTCCTGAACCCACAGTATGAAGGGAGCCTCATCCCTGCCTACGTCATAATGTTTTTGATGGGCTCCTGGGCTTTCTTATCTGCTGGCGGATCTCTGAGAAACCTAAAACTCTGCTTAACCTGTAAAGACAAGGACTTCCTGCTGGCCAACCACCGGCCAAGATAACGCACACACACGCTGGGACATCTTCACAAACAAAATGACTCTTTTTGTACAAAGATGAGGAAACACTGGTTCAGTTATAtctcatttaatttttgtttttcattctcttattttttttcttctgtggtgGTGTTAGATTCTGGGTAGATAAGCACTGGAAACTATTCTGTAAAATCTGCAGATATCCATAAAGCAGGCAGGGCAGGAGTAATCCTACTGGGGGCTTCCTTACGTGGTTTCTCCACTGTCACTCAATCACTGTGTTTCCCGATGGGGCCGTCTGTACAGATAGGGAGGGAAGTGGTATCTTGATCTCTAAGCCCATCTATCCCTAGCCTCTCTTTCCTAAACAGCTTGCTAAAGTCTGCCCATTGTGCTGAACGGTGTGGTGGTTTGATGatgtggagtttgttccatCGGAGACGAGCTGGAGTGGAAGAAACTGCCCAGTTGTGTTGATGAAGCCGAGTCTCTGGGATCTTTCAAAAAACAGCGTGATGACATTCTGCGATTGATAAGTCACCAAATGAGCGGCATGGGCCGAACAGCCACCTTTCACTTGTTCTCTTTCTAAATGTTCTCTTATTCTCCCTCAGTTCACCTGTGACTTGAGCAAGATTTAGACCCAAGCCTTTTAGACCTAACAGGCTAGTGAATTTAGGTTGAGGTTCAGCTCAGATCAACTGGGGAACAAAACAGAAGGTATCCGATGTATGTCTTTAAATTGTTAtgcttacttttttttatttttttttactccctGTTTTGATGAGATTTAGTTCTGGTGGCGGAGTACACTGTTGTGCTTAATAGCTTTATTTCACGGTTTCTGTGGAGATTGTACTCCTTTGCTACCAGTTGCTTTGTGCTCTCTCTGGTACTGTGCCTTCTTTGCTCACTGAAGAGGTCATTTTAGTTAGCAATCATCTGGAAACATACCCACTTATTTAGAAACCAATTTACAGTACAGAGTAATACCATTACCGAAAACCATTGAAATTTAAATGCTTTGTAATTTCTATCATAGTGAAATTAACTGGAGCAATCATCCGTCAGATGATTTGAGTAACATTTAATCATATTGAAGTCATaagaccattaaaaaaaaaaaaaaaaaaaaaaagacttcgTAGATGAATACCCGAAGCATAAGTGCACCATCTTGCAGGAGATGACATTTTCTGAAGTGTGTAGAGTGAAAGTAATGAAATGAGCttagtaataataacagtaataatgcaattaataagCTTTACAAATTAGTGCTGCTAATTTCAGTAGTAATCCAAGTTAATCGCATTCCCTCAAGAGTTTTTCATCAATTCCTGCTAGATATTACTGCTGTTGCGATTCCAAATCTCTTTGCACTAGATGATAGAGAAATCAAGCATGTGTTTTGATTCAAGCTGATAATTTACTTAGGACCTCTCCCCAGGGGTAGTGTTTAGGTGGGGGGGAtctaaatcattacatttttacagtaattGAAAGTCTTCACTACATTTCTCACTtgattttactgtaatttcttATAATGATGGATGTACAGCCAATGGTAGcaatcttgtttattttactgatttgaactgtaaaacaaaccacacacaaaaaaatattgttaaaaacacttgtaaagtttttatttcttaatctaACGGGGACAACATTTTATAGATATGTTTTgactataaaatgaaaatgctcaGCGTAATTAAAGGTAATTTTTCTGATTCCTAatgctataataaataataatgctaaaACCACCACTGCCCAGTAAACTGAGGACCCTATTGAGAATCCCCATTCCTATAAAAGCAAGGAAACTAACAGTTTTTATCTTTTCTAAAGTTCATTACCTTGACAGAGGTGACAGAGAATGAGGTTACGGGCCATgttctcccccccccaccccaagagCCTTATGGGCTAGATATAGGGTTTATCTGGTAGTTATTCAAGTGACTCATTATATTGTGTTGGGAGGAAAGATGATCCTGGGAATCTGAGATGTGACTGACTTCTAATACCTCCAGGAGAGGTTCAAAAATCACTTTGTTCTTGAAGAAGAATGTCTGAATTTTGTTGAAAATTATCCCACCAccctgttacacacacacacatttcttcacACTCAGCACAAGGAGACATAAGAACATTTGCTGAAAAGGAAAATCCACTATACTTTTCAGGCAATAAATACGCTGTTTATATCTTcagatgtatgcatttgtttattctcTTTACTGGGGAGAATGTGTGATGCACTTTTTTTTAGGGCATTTATaacttctgaaaaataaaagaccatAGTTtagtattaaattaatctgatttgTTTAGGCCTTCAACTTGAATTCTTGTGTAGATTTTTATGATGGTTTGTTGTTTGAATTAGGGTCTAAGGATTATGATGTAGGCCTATTTTCTGAGTATTTagattttctgaaaaataaacctgCTCTTATATCACAGTAAGAGTAGGATCCTACTCTATCAAaattatacagtgttttaaaacattgtatatatatatataatatactgtaacaTTCATCTGGTAGACAAAATCATGTGAAACAAAGCCTAACCTGCATCCTCAgggttttattattgtattttgctgaATTTGTGCTTTTTCTTGCACTTCGaatagtttgtatttatgtgtaatCCTGAGGAAAGTGGTGTAAGCTGGAAATGATAAAGAATGgccaattaaaattgtttattgTATGAA

Function

GO: NA

KEGG:

id description
K06172 APH1; gamma-secretase subunit APH-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA upstream 528306 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 559775 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 1066405 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 1068543 27566695 ~ 27569353 (+) True G25709
TU32559 lncRNA downstream 36078 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 36078 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 85037 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 253965 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 428363 29074456 ~ 29082381 (+) True G26103
AMCG00007747 mRNA upstream 13906 28619421 ~ 28623990 (+) True AMCG00007747
AMCG00007746 mRNA upstream 20498 28612614 ~ 28617398 (+) True AMCG00007746
AMCG00007741 mRNA upstream 61646 28551820 ~ 28576250 (+) True AMCG00007741
AMCG00007735 mRNA upstream 183863 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007734 mRNA upstream 199861 28431981 ~ 28438035 (+) True AMCG00007734
AMCG00007754 mRNA downstream 36091 28682184 ~ 28700062 (+) False AMCG00007754
AMCG00007753 mRNA downstream 55888 28701981 ~ 28717335 (+) True AMCG00007753
AMCG00007751 mRNA downstream 77030 28723123 ~ 28729718 (+) True AMCG00007751
AMCG00007752 mRNA downstream 120622 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007763 mRNA downstream 254166 28900259 ~ 28911566 (+) True AMCG00007763
TU32501 other upstream 183189 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 543155 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4443415 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5444375 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6354938 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 357002 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1119735 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6965023 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9498891 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9522477 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_04424762_04428710.mRNA True 855 mRNA 0.50 5 CI01000026 4424762 ~ 4428710 (+)