RNA id: AMCG00007747


Basic Information

Item Value
RNA id AMCG00007747
length 1316
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00007747
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28619421 ~ 28623990 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGCCGGTATGTGAACCGGGTGTGTGCAGGCGTGGTGTTTTCCGGGGCGGTGGAGAAATCAGAGGTCAGCAAGAACCCCGAAGTGCCCTTTGCTAGCGAGGCCTACCGCATCTCAGCCACCTCTCGAGGGAAGGAAATGCGGCTCACCCTCACACCAATCGAGGGGGAGGACAGCAAAGATGGAGGCGAGACCGGGGACCCACAGCCCATGGACGTGGTCTTCCGGTTTGGAATGTCTGGGTTTTTCCGGTTCACCCCGGAGGATGAGCTGCCCAAGCACGCCCATCTGCGCTTCTACACCAGGGAGAGGCCGCGCCAGGCTCTGAGTTTCGTTGACATCAGGCGGTTTGGCACCTGGGAGCCCAATGGGAACTGGCAGCCAGAAAGGGGGCCCTGCATCATGGAGAATGTGTTGCTGAACCTATTGGACCGTGCGTTTGACAGGCCCATCTGTGAAGCTTTACTGAACCAAAAATACTTCAATGGGATTGGGAACTACCTGCGAGCAGAGATACTTTACAGGTTAAAGATCCCCCCATTTGTAAAAGCAAGGACAGTGCTGGATGGGCTTCTATTAAAGGACCATGCTGAGAAGAATGCAAAGCGTGCCAAAGAAGAGAGCACACCCGTTCAAGTGTCAGAGATGAGTCTGAGTAAGAAGGTGAAAGTGAAGAGGGAGACTCCCGATCTCCTCAGTCTGTGTCACACTGTGCCTCTCGAGGTCCTCCAGTTAGGGGGTAAGGGCTATGACCCAGAGCAGTCTGGCGACTCATCCTTCCAGGAGTGGCTCCAGTGTTACTGCGTGTCAGGGATGAAGTCCTTGAGAGACCACAATCGCAGGACCATGTGGTTCCAGGGAGATGCTGGACCCATGGCCCCAAAAAACTCTAAATCTCCCAAAGCAAAGAAAAGAGTTACAAAGCAAGGAGGAGATGAAAGCGATGACAAGCAGGTGGTGCAAGAGAAGTTCCAGGACAACAAGGTGAAAGGGGATAAAGAGGAGACGGAGGGAAAGACAGGATTGAAAAGGGGGAAAGGTGCTGAGAGAAACCTGGAAGCCACCTCTCCAGTGAATAAAGGGAAGACGATTCAGAAGAGGAAGACTGCAACAGCGGAACAAGCAGAAAGGCGCAGTGGGAGAATGACACGAGCCCGGGCTAAACAAGGCAgctaaaacacaattcaaaggAAAGAAGACCAACTACAATGAACCACCATTATGgcccattttaaatgtatatttttgaattcCTTGGGATacttttttaacttaaaaatatttttttagcaaaaaatattaaataaaataaa

Function

GO: NA

KEGG:

id description
K10567 NEIL1; endonuclease VIII-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA upstream 509831 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 541300 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 1047930 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 1050068 27566695 ~ 27569353 (+) True G25709
TU32559 lncRNA downstream 58181 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA downstream 58181 28682171 ~ 28699741 (+) False AMCG00007754
TU32611 lncRNA downstream 107140 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 276068 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 450466 29074456 ~ 29082381 (+) True G26103
AMCG00007746 mRNA upstream 2023 28612614 ~ 28617398 (+) True AMCG00007746
AMCG00007741 mRNA upstream 43171 28551820 ~ 28576250 (+) True AMCG00007741
AMCG00007735 mRNA upstream 165388 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007734 mRNA upstream 181386 28431981 ~ 28438035 (+) True AMCG00007734
AMCG00007736 mRNA upstream 198125 28414965 ~ 28421296 (+) True AMCG00007736
AMCG00007745 mRNA downstream 13906 28637896 ~ 28646093 (+) True AMCG00007745
AMCG00007754 mRNA downstream 58194 28682184 ~ 28700062 (+) False AMCG00007754
AMCG00007753 mRNA downstream 77991 28701981 ~ 28717335 (+) True AMCG00007753
AMCG00007751 mRNA downstream 99133 28723123 ~ 28729718 (+) True AMCG00007751
AMCG00007752 mRNA downstream 142725 28766715 ~ 28776364 (+) True AMCG00007752
TU32501 other upstream 164714 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 524680 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4424940 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5425900 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6336463 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 379105 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1141838 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6987126 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9520994 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9544580 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile