RNA id: AMCG00007749


Basic Information

Item Value
RNA id AMCG00007749
length 3751
RNA type mRNA
GC content 0.50
exon number 26
gene id AMCG00007749
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28624088 ~ 28637306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGCTGTAGTGACTCGTAAGTGTGCTGAACAAATGGCAATGTATCATCAACCCGTGTTGAAGAACCGGCGAACCCTACTGGAACGAGTAGAGAAGTTTATTTCTGACATTTATTTCACCGATTGCAATCTCAGAGGAAGgctCTATGGCGACACTTTCCCTGTAGAGTCTCTGTCTTCATTCCTCACTCCCAAACGAATTCCTTTCTCAGAAGCCATCAAACAGAATTTCCAACCATGTAAGGTCGGGGACAGCTTTGGACCTACATGGTGGACATGTTGGTTTAAAGTGTCTTTGACTATCCCTAATGCCTGGATGGGGAAAGAGGTTCACTTGCGATGGGAGAGTGATGGAGAGGGGATGGTTTGGAGGGATGGGCAGCAGCTTCAGGGCCTAacaaaggagggagagaagacaATCTACATTTTGTCAGAGAGCCTGACAGATGAGGCGCCACATAGTGTCACCCTATATGTGGAGGTGGCCTGTAATGGACTGTTTGGTGCCGGACAGGGATCCATGATCGCACCCCCTGACCCTGACAGGAAGTACTCCGTCCAGAGGGCAGAGTTGGCAGTGTTCAATCGTGACGTCAGTGCATTACTGACAGACTTTGAGATGCTTGTTGACATTGCGAAGTTGCTAGGTGAGAGTGAGCAGAGGGGCTACCAGGCCTTGTACACAGCCAATGAGATTGTGAACCTGTGTGACCCCACTGACCCAGGCACCTTCCCCGCCGCCCGCAAGCTGGCACAGAGGTTCTTCAGCCAGAGGAACGGCCAGAGCCAGCACACCGCACACGCTATGGGCCACTGCCACATCGACTCCGCCTGGCTGTGGCCTTATGAGGAGACGATCCGAAAGTGCGCCCGCAGCTGGGTGACTGTCATTCGTCTCATGGAGAAGAACCCAGAGTTCATTTTCACCTGCTCCCAGGCCCAGCAGTTCGAGTGGGTGAAGAGTTGGTACCCTGGCCTCTACTCCCAGATCCAGCGCTTTGCCAGCAAGGGTCAGTTTGTTCCTGTTGGAGGCACATGGGTGGAAATGGATGGAAACCTGCCCTCGGGGGAGTCCATGGTGAGACAGTTCCTGGAAGGACAAAGATTCTTCTACAAAGAGTTTGGGAGGTACTGCTCTGAGTTCTGGTTACCAGATACATTTGGATACTCGGCACAGCTTCCACAGATTATGCGGGGCTGCGGGATAACTCGATTTCTGACTCAGAAACTCAGCTGGAATCTGGTCAACACTTTCCCTCATAACACCTTTTTCTGGGAAGGCCTGGATGGCTCGCAGGTTCTGACGCACTTCCCCCCTGGGAACTCGTACGAGATGAAGTGCAAAGTGGAGGACctgctgAACACTGTGAGGAACAACAAGGACAAGGGGAGGGCCAATCACAGTGCGGTGCTATTTGGATACGGTGACGGTGGTGGGGGACCCACGCAGATCATGTTAGATCGACTACAGCGGGTCTGGGACACGGACGGCTTGCCCAAGGTCCAGATGTCCACTCCTGACAAACTCTTCACAGAGCTCGAAGATGACTCTGCTCTCCTCTGCACCTGGACTGGAGAATTATTCCTGGAGCTACACAACGGCACCTACACAACGCAGGCtcaaATAAAGCTGGGGAACCGCCAGTGTGAAGCTCTACTCCATGACATTGAGGTGGCGAGCAGTCTGGCCCTCTGCAGGGGCAAGAGCTTCCAGTACCCCTCGAAAAAGCTTCAGGAGCTGTGGAGacTGCTGCTCCTCAATCAGTTCCATGACGTGATACCAGGCAGCTGTATCGAGATGGTAGTGCAGGACGCCCTCAAATACTACCAGGAGATCCACAGTGCTGGGGCAGATCTGCTGAAGGAGGCGTGTGGCGTGCTGGGGGCAGGAACAGGAGCTCCAGAGGCTAGTGGGAGTATGGCTCTCAACACCTTGCCATGGGAGCGCATGGAGGTCATTTCACTGCCAGGGGGCGCTACTCAGCCAAAATTAGccCTGGTCCAAGTCCCTAGCATTGGTGCTGCAGCAGTGACTGATTCTGTGGAGCCTGTGTGTCCTGTTTCTGTCACAACTCAGGCTGATGGTACAGTGGTGATGGACAACGGGATCATAAGAGTGGTTGTGGACAAGGCTGGGCGTGTGGTTTCCCTCTGTCTGGTTAAGTCAAAAAGGGAAGCCATTGCGGACGGTTCCACTGGGAATCAGTTTGTCCTGTTCGATGATGTCCCACTGTACTGGGATGCCTGGGATGTGATGGACTACCATCTTCAGACCAGGAAGCCAGTGAGCGAGCTAGTGCAGCCTGTTCACATTGTGTGTCCTGGGGGGCTTCGAGGCAGCGTGAGCTTCTCCCTGAGAATCAGTGGCCAGAGCTCCCTTTCCCAGGAGCTCATTCTGGACGCCATGTGTCCTTATGTTAAGTTCCAAACGCAGGTTGACTGGGCTGAGTCCCACAAGTTCCTGAAGGTGGAGTTTCCTGTGAGGGTGCGCAGTGCCAGCGCGACATACGAAATCCAGTTCGGTCACCTAGAGAGACCCACTCACAGGAACACCTCTTGGGACTGGGCCAGGTTCGAGGTTTGGGGTCACAAATGGGCTGACCTCTCTGAACATGGTTTCGGTGTTGCAGTGCTCAACGACTGCAAATACGGCTATTCAGCTTACAAGAACACACTCACCCTGTCTCTGCTTCGTGCTCCAAAAGCGCCAGATGCCAATGCTGATATGGGGAAGCACCAGTTCACTTACGCAGTCATGCCCCATGCAGGTTCCTTCCAAGACTCAGCGGTCATTCAAAGTGCGTACAACCTAAACTTCCCCCTGCGTCTGTTCCCCAGGGGAAAGAGTTCTTCTAACAATAGCTCTTCGAGTGCTTTCTCTGTGAGCTCTCCTGCCATCATCCTAGAGACCATAAAGCAGGCCGAAGACCGCACAGATGCCCTCGTAGTGCGCCTGTTTGAGTCCCACGGCAGCAGTGCGTCTGTCACCCTTGCTACCTCTCTTCCTGTGAAGGAAGCTGTGCATTGCGATCTCCTGGAGCGTCCCGATTCGTCTGCCACTGTACCGGTCACAGCCTCTGGAATCCCACTGACCTTTAAACCCTTCCAGATCATCTCCCTTCTCCTCATTCTCAAATGAAGGTTTTCACAAATCATGAACTACTCTAGTAAGTGGTGTGAAAGGGGGGCGCTGTTTCTATTAGTCAGGATAATACACATTATACACTAGCACTATGCATACAGTTCTTGGCTCCACGTAAATGTAAAGCCAGACGTGCAAGGTCAGTATGCCCCTGACACTAATGAATACTCTAGCATCTCTAAAGTTGAAGAACTCGAGTTAATATTCCATTTGGGACAAGCGAATCATAATCGTAATTCTCCCAGTATTTGATGAAGGAGGCTAATGGTTAGACATAAGAAACATTGTCATAAATTCTTCCAATTCTATCgatataaaatgtttacttaATTGGAAAAGCTGAAAAACATGAAGCATTATTCAATGTTatgaaaacatctgaaatacATTGCTTAGGTTTTTTCAATAAAACCGAAATGGAAGAATTAATCTggttatttgtttgattttgatcCTCTGAAATGCTAATAGCAACATTACTGTTGTGTATTTAGTTTAGAAGGTTTGTCATACTATTCCCTAAGTAGGTAGATATAATATCCATTTGCTGGAACAgtaaattagcattttaaactaatctgataattgaaaataattggtATTCTTCCA

Function

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01191 MAN2C1; alpha-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32318 lncRNA downstream 957016 27662224 ~ 27667072 (-) False G25768
TU32317 lncRNA downstream 957538 27662224 ~ 27666550 (-) True G25768
TU32286 lncRNA downstream 1059379 27564039 ~ 27564709 (-) True G25750
TU32285 lncRNA downstream 1060398 27563240 ~ 27563690 (-) True G25749
TU32284 lncRNA downstream 1061070 27562728 ~ 27563018 (-) True G25748
TU32591 lncRNA upstream 39534 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA upstream 59159 28696465 ~ 28699849 (-) True G25972
TU32612 lncRNA upstream 95458 28732764 ~ 28732994 (-) True G25985
TU32614 lncRNA upstream 96806 28734112 ~ 28734449 (-) True G25987
TU32688 lncRNA upstream 257387 28894693 ~ 28898576 (-) True AMCG00007757
AMCG00007750 mRNA downstream 11847 28595995 ~ 28612241 (-) True AMCG00007750
AMCG00007744 mRNA downstream 42898 28579139 ~ 28581190 (-) True AMCG00007744
AMCG00007742 mRNA downstream 74542 28546752 ~ 28549546 (-) True AMCG00007742
AMCG00007743 mRNA downstream 120698 28454814 ~ 28503390 (-) True AMCG00007743
AMCG00007740 mRNA downstream 170502 28438855 ~ 28453586 (-) True AMCG00007740
AMCG00007748 mRNA upstream 9705 28647011 ~ 28674262 (-) True AMCG00007748
AMCG00007762 mRNA upstream 117174 28754480 ~ 28761777 (-) True AMCG00007762
AMCG00007758 mRNA upstream 140449 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007761 mRNA upstream 225272 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007760 mRNA upstream 229298 28866604 ~ 28878017 (-) True AMCG00007760
TU31949 other downstream 2992496 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3359137 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4356167 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4651423 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8151384 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6232129 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8602783 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8857605 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8930311 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8933651 37570957 ~ 37571488 (-) True G27439

Expression Profile