RNA id: AMCG00007751


Basic Information

Item Value
RNA id AMCG00007751
length 4498
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00007751
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28723123 ~ 28729718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTCGGTAGGTTGTAATTTATTCTGAACATGCtcttgaaaacatttaacatgtGCGGTCTGAAACAATAGACAATCAGTTGGAAGACTTTTAATTGGTCCTGTACAAACATGATTCATAATTAACTTCAGAAAACATTACACAGCAGATTCAATTGTGTAcatgatatttacatttacatgggCCACCATTGCTGAATATTTCAAGTGCTAGAAACTCTTTTGTATTcctattataaaaaatatacttaaatgTTCTCAAGATGTGAGTAGCTACAAATTAGCTTATGGTGGTGTGTTGGCTTTAAAAACATAGGACTCCGCTGCATTTCCTTGTGTGTGGAGTCTCCCTTTCAGAAACACAGTCTGTTGGTTGAGTTACAGTAGACAGTTCCGCACCCAGGAGTCTGCAGCATGTTGGCCTTCTTCATGCAATATGTGTCTCTATAAATCAAGTGGCAGGGAAGCCATCTTCTCTATGATGGCTAGATGATAGAAATGCAGGGCTTAACTGATTGTGATTGTAGTATCATAAACATCTGTTATTCTACACAGATTTCTTAGAAGGATCCCATGCAGGCAGCGGGGAAGGCCGGTGTGGCTCACATTACCATTTTTGACTCGGCAGCTCCAGTTGTCGTCCCGAAATAAACACCATTCCACGGCCTTATATGTCCAGCAGCTCCCTCTGACTGATTGTAGGGGGAATCATGTATCCAAACAGCATGAATCAGCTCAGCAGCCTCATTGTTGCTCTCTATCAACAagctgtctctgtgtgtcaggagGTCTACTTCTGCTTGCCATGCACGTCACAGAGCTCAACAGGGAGTGCCTCATACACCTATTCTCCTACCTGGACAAGGACAGCCGCAAGAGTCTCTCGCTCACCTGCCGTCAGCTGAGGGATGTCTTCCTGGACTCGGCCCTCTGGCCTCTGCTCAACTTCCATTCGCCTTGCGAGCTGAGGAAGGACAACTTTGTGCTGGGCTCATCGCTGAGGTATCTGTCCATCTGCTGGCATTCGAGCCGGGTCAAAGTGTGCAACATCGAGGACTGGCTGAAAACCACATTCCAAAAGGATATCTGCAGGAAGCATGAGACTGTCGTCAGTGACTTCTTAGCCAAAGTTTGCATCAAGTGCCCCAATTTGCTGTCTTTGACGTTGTCTGGCTGTGGCCACATCGCAGACCGAGATGTGCTGCGTGTCCTGCAGAGCTGCGCAGGCCTGCGTTGCCTGCGTCTGGAGAACTGCGCGCGAATCACCGACGACGTGCTGCGTGGGGCGGCTGCCCACGGACACGGCCTGCGCAGCGTGCAGCTGGACTTCTGCCGTAACGTGAGCCGTGCAGGCCTGCAGCTGCTCAGAGACAGCCGCCCCGCCGTCCAGCTGAGCGCCGAGAGGAGTGCGGCCATGATCCCGGACAGCCAACCCCAGGAGAAAGCCAGCCTCACCAGAACCTTGCAGAAACTACTCCACTGTTCCTGAAGccatgcttttcattttctaaaaagGCAGATGAAGTAGACCAACAAGTTATTACAAGGGTGGCCAAATGTCCCGGTCCCCCTATGGAAGGATTTATTCTGCATTTGgtctcattttgtattttacttacaaattaatatttatacagatTTTTACAATTTCAAGTTTTGgtgattctgtgtgtgttttttatttctgtggtaATGGTCTGAGTGAAGTACATTACACCTCATTCCATTTATAGAGttatgacaataataataaaataacacccCTTGTTAATTCAAGTAGGTGACTGATAAAATACAACGATCCAGCTTCTCTCTTCCTGTAGCCCATGTTACATCTTGCTGTCCTATTGGGATTCCTAATATGATACTCCTTTGTGTGACACTGAGTCTAAAATGAAGATGGTCATCACTTCTGCTACTGCAGTTCCACCAGTCACAATTCTaggatttttaaaaaacaactaattgtGCCAGGCCTAACTGACTTGGGGAGGAACATGTGTCTAATACTTTCCCCATTAGTCCTTCATGCACCAGGAAGAAAGGGATATTGACCATATGGCACTGGAGCTTTACAATTATTAAAGTGTAAACACTGCACAGGGGAAGGCTTTCAAACTGACGAAAGACCAACTATCAATACTAATAAAGACATACGGGTAAATATGAAGAAGCTGTTGACGTGTTTAGCTGTGTCCATCGTTATGGTTATTCTTGGGAATACAGGTTGCTCCTTGTGTCACCTGCCCGCTGTTTATTCTTTTGTGTAATTATGTGTTTGCGTCTTTATTGAACATTCAAAGTGTCAGTTGCATTTGTGAGTATTGTGTCAAAAGTTTAGAGGCCACACAGAAAAGCACCCCCATCATGTGAAAAGTGAGGTCTGGAATTAGTAATTGAAGTACGTACGCATGTGTGAGTTTCATGAAGACGAATGGCACAGCAGCCAAGAAAGTAGCAGCACACCAGAGAATATTATATAACCATGTGTCGAAGTGTGTGCTACTCacaattcatgtttgtttttcctttgtgtacATGATACAAATATGTGGCCCATTCTAAGGTAACAGCCATGTCTATGACAGCACGTACAACACTCACGAAGCGCACAAACTGAACACACTGGTAGATGCATGCTGTTTCGTTTGACTTTTTAAGGCGGTTGAATTATGTTATCCACTTGACTTGCGTAATCCAGTTCATGGCGGACGTAAGGCAGAGTTAACGTCGCTGCTTTCCCTGCACAGCCCCGCGCAGGCAGCAGTGCGCAGCCGCTCTTCCGGGCTTTGCGGCAACAGTGACCTCATGTCGGGCAGCAGCACAGGTTCCCTGAGGACGCGCTGGCCCGGCGCCACGGTTGTGAATAGAAACACTTTATGTAAGAGAGCAGGATATGGAAATAGGCTGGAGAAGAGCTGCGCGCTACACGTGACTATGCTATATTTGCTGGATTGCATTAGACAGCTCCTGCAAACCGAGGGGCCTTTTGCACCGAGCAGACATAACATCAGTGCTCTACCACGAGTCACCGGTGAAGCAAGACTAATTTTAAGCCTCTCTCTTTTTCGCATGCTGAATGGCTGCTCCAAAAGTCATCCAGCTTATACAATGTGTTATTTGAATTGCGTAAGGTTTTGAAacagggggaggaggggggtatATGCGTGATCGTCAGGTGTGCAGTACATCACACGTGGTCCACACTAGTTTCTCTGTCGGCCTACGCGCTAAATGAATAGATAAGATCCAGGACAGTCATCGTTTTCACGTTGAATATCATCCATGTCCCGCAAGCCTCCTTCAACAGACACACATCACTCAGTGTAGACGCGACACAGGCACGACTTAATCCTGTAAGTGAGGTGAATATCTCAACACATCAACACgcacatgtatatatagatgtgcAAATTGTTCTGGGGGAATTTCATATGCagggatattttaaatgtgtttgtggtgGCCTGTAGGAGAAcctggagtgttttttttccccccttttctttaaatcagactagatttgttttttattatccCCCTTAAGCTCTGtgtaattatgattttaaatatgaaacccATTCAATTTGGACACATTGTTAGAGGCTAATTCATTAATTGAGTAGATGGTTGTGTGGGGTGCAAGGCCATAAGGTAGCGAAGTTAAATACTGACATCAGCATCAATGTGCTTGTTTATCCTTTGGAAGCTATTTTAagaaactgtaaatgtattgcaGTGGCATTCCTAACCATCTTCAAATTGGCCTTTATTTACTGATTCAAAAACAACGACATGATTTTATGCTACAGTATTGTTGTACAAATCATTTTGCAttagtatattaaaataaatcaatactacCTTCAAACCGCTTTACacttttttcttaaatacacatatttgttAAGGAAACTATAGCATGAGATGCATTCCAAAACATCAAACACTGACCCACACAGCAAATTGCAAAGTACAAGCCAGTACTTAGTTGGTTTACAAGGAGTAGAAGGCAGAAGCCATAGGTACACAAAATGTACTGAGGGTAGGTGTCTTTGCAATTCTTGATTATAGTTGGGGCATGTTTTGATCTGAGAGGGGCCAAGGTCAGGTCTTTCTAGAAAAGTTTTGATTATGGACTAAACAGTGGGCGCAGTGTGGATGCCATGTGAACACTAGTGTTAGCTCAAGCAACTTGGCACTGCATCAATCATTACTAAAGATTGTTACTTCGTCAAGACTCTTGTTCAAGAAATACTAAAAACGTCCACCCTGCATCTGCTTTGGATAGGAGACGGATTAACATTTATCTTCTGGAGACTCCAGCACAATCCCTGAAGCGGGAAACCCCTATCTCTGCAGCGCCAACACTACTACACCCAATTTACTATTGGCACTGTGTGTCTTGGGAGGGTTTTGGATTTGTTGCTGAGGTAACATTGCATCAACAGTATTGCTGCATATCTGTCTCTGCCCTGCACAGTTATTAAAGATCATG

Function

GO: NA

KEGG:

id description
K10288 FBXL22; F-box and leucine-rich repeat protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32559 lncRNA upstream 23382 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 23382 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 613533 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 645002 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 1151632 27570543 ~ 27571491 (+) True G25753
TU32611 lncRNA downstream 1412 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 170340 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 344738 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 581905 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 637655 29367373 ~ 29367723 (+) True G26167
AMCG00007753 mRNA upstream 5788 28701981 ~ 28717335 (+) True AMCG00007753
AMCG00007754 mRNA upstream 23061 28682184 ~ 28700062 (+) False AMCG00007754
AMCG00007745 mRNA upstream 77030 28637896 ~ 28646093 (+) True AMCG00007745
AMCG00007747 mRNA upstream 99133 28619421 ~ 28623990 (+) True AMCG00007747
AMCG00007746 mRNA upstream 105725 28612614 ~ 28617398 (+) True AMCG00007746
AMCG00007752 mRNA downstream 36997 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007763 mRNA downstream 170541 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007756 mRNA downstream 203247 28932965 ~ 28936834 (+) True AMCG00007756
AMCG00007755 mRNA downstream 251105 28980823 ~ 28988913 (+) True AMCG00007755
AMCG00007767 mRNA downstream 259995 28989713 ~ 29000085 (+) True AMCG00007767
TU32501 other upstream 268416 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 628382 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4528642 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5529602 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6440165 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 273377 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1036110 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6881398 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9415266 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9438852 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile