RNA id: TU32560


Basic Information

Item Value
RNA id TU32560
length 1727
lncRNA type sense_over
GC content 0.35
exon number 6
gene id AMCG00007754
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28682171 ~ 28700062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATAGACAGAGTTTCTTTTCCAGCCATCAGATCACACTACCACAATGAGGAGCTTGCTTGCTGTTTTCTTGGTGGCTTTAATCGTGTCTACTGTACCAGTAAAGTACCAGaaTGCGAATTGGACATGGACCCGGGAACAGGCGACAAATTCCTTTTCCGCCTTttctacaataaaataacaaaacgtTGTGAGCCATTCATGTATAAGGGAAATGGGGGAAATGGGAATCGTTTCATTACCGACAAGATGTGCATGAAAAACTGCTCCGATGAGCCAGACAAATTTTACCCCAATGACAagGAAGCCTGCTTATTGACACTGCAGATTGGGGTTTGCTCCACTATTTACTTTGGTATTACAATGTAACCAAGCAGAAATGCAAGACCTTTTATTACACTGGCTGTGGAGGGAATGGAAACCGCTTTATTAGTCATGACATTTGCAATTCCACCTGTGCATACTACAATAATACTGTAATTGAAGACGACGATGAAGATATTCCAGAAAAAAGTATCTGTGGGATTGATGGTAGGAAGCATCCTGTGGTGTTTTGGtgtaatcatcttcataattgtaattgtttttgttgtgacGGGAAAAAAATCTCCAAAAAAAGACTTTGTacctttaaaacaagaaaaggaagtAATTGAAATGGAGTAGACTGACTCTCCCAGCCATGCTGCACTGTATGATAgacatcagtgttttttttttttcttaatgttttatatattgtacttCTATAGTTCCTTAGAGGAAACCTAAAATTCATTaatgagataaaaaataataatctttaagACCTAATTGAAATGAAGGAAACCTGGATGTTATCTGAATGTAACTACTTAATTAAGGGTAATATAATATTACACTGGGTAACTGTTATATCATAGTAGAATTatgttgaaatgttcaatataaatgtaaagctTTATATTCTTGTGTAGTGTACTGAGgctgtattcattcatttcacacacacaagaaatcCATATctaaacattgtttatttgatgcattacaattttcttttttctttgatttacacaacatactCCACAACATTTAATGtgttgaaaaaactaaaccatttaaaataaaaacctgaaaagtcttcattacaGAAGTATTCACctcctttgctatgacactcctaaataagcttGGGTGCCTTCAGGattcacacaataagttgaATATATCTGGATGCaataaatatggttttaaaGACACAAGGCCATggagctttcaaaaacagacaaagcgaccctggagtggcttaaaaacaagaaagtgaatgttctatagtggcccagtcaaagtctgAACTTGAAtctgagaatctgtggcaagattTGAAGATTTAAGTCCACCAATGATTCCCATCCAATACTGAATactgcacaatccagatgttcAAACCTGGTAGAAACTTACCCTAAACAAtccacagctgtaattgctgtcgAAGGTGGTTCGACCAAGTTTTGACtcgggggtgaatacttctgtttcagtttttgtatttttcattaattgttgtttcacaataatatgtatattgcaTCTTCAaggtgttgagtaggttgtgcattttttaaaaatgtgattacaagggggtgaatacttcctatagccaatGTATCTGCATATATacatcattttttgtattgtattttttagtgGTCTGGCATCTGACGTTTTTCAACTGCAcggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32410 lncRNA upstream 572581 28104602 ~ 28109590 (+) True G25827
TU32393 lncRNA upstream 604050 28070346 ~ 28078121 (+) True G25819
TU32289 lncRNA upstream 1110680 27570543 ~ 27571491 (+) True G25753
TU32235 lncRNA upstream 1112818 27566695 ~ 27569353 (+) True G25709
TU32611 lncRNA downstream 31389 28731130 ~ 28731401 (+) True G25984
TU32676 lncRNA downstream 200317 28900058 ~ 28901126 (+) False AMCG00007763
TU32753 lncRNA downstream 374715 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 611882 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 667632 29367373 ~ 29367723 (+) True G26167
AMCG00007745 mRNA upstream 36078 28637896 ~ 28646093 (+) True AMCG00007745
AMCG00007747 mRNA upstream 58181 28619421 ~ 28623990 (+) True AMCG00007747
AMCG00007746 mRNA upstream 64773 28612614 ~ 28617398 (+) True AMCG00007746
AMCG00007741 mRNA upstream 105921 28551820 ~ 28576250 (+) True AMCG00007741
AMCG00007735 mRNA upstream 228138 28438644 ~ 28454033 (+) True AMCG00007735
AMCG00007753 mRNA downstream 2240 28701981 ~ 28717335 (+) True AMCG00007753
AMCG00007751 mRNA downstream 23382 28723123 ~ 28729718 (+) True AMCG00007751
AMCG00007752 mRNA downstream 66974 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007763 mRNA downstream 200518 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007756 mRNA downstream 233224 28932965 ~ 28936834 (+) True AMCG00007756
TU32501 other upstream 227464 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 587430 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4487690 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5488650 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6399213 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 303354 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 1066087 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6911375 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9445243 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9468829 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile