RNA id: AMCG00007755


Basic Information

Item Value
RNA id AMCG00007755
length 2507
RNA type mRNA
GC content 0.36
exon number 9
gene id AMCG00007755
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28980823 ~ 28988913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATGCACTGTCTCCTTGACAATATCCTAGTAACCAAGGAGAGtacacacaaatgtattcaaatgacTTCCGGGTGTCTTTTTCGATAAatcattactttatttatttaatttgcgtttatttttttagatacaACTTcctaatttaatgtaaatattcgTCTTCACGGTGCAACTGAATAACCATTTACCTCTTCATGCATCGTATTTCATACAAAGAGAGGTTTATTAATTATAGGTAGCTAGGCAACTAGCAACAGATGAGAGACAGTTGAAATTGTGAAGTACAAAATGTACTGAAGATCTGATATTGCATGCCAAATTCGGAATATACAAGGATGGATGCCAAAAAAGACAAGGAGCACGAAACTGATTTTGCAAAAATCACGGCTGCACTGCTGAAATCTAAGACAGGGGAGTTTGATTTGGAGTCAATATTGTACCTGAAGCTCCGAGGTCTTGGTATATGTGACCTGGGATGTATAGGAGAATGCATAAACTTGGAAAGACTGGACCTTTCAGGAAATAATATCACAAGCCTAATTCCTCTCGCTTCCCTGAAATTACTTCTTGTGTTAAATTTGTCAGCAAACAGAATCACAAATTTAGAACCCATTTGCAACTGTGACAATCTGCAAAGCCTAAATGTGGCTGCCAACCTTATTAGCAGTGTTGAACACTTGCACTGTCTGCACTCCTTAAGAAAACTGGAAAGTATTCGTCTTAAGGACAACACATTTAGCTACAACAATCCAGtttgcaAGAACACATCATATAGAAATTTAATCCTAGAAATGTTCCCAAACATCAAGGTAGTGGATgGTGAAAGGGTGGTTGGCCGTGGCAGTGATTTATATCAGCTATGCAAAGACATTGATGAGTCTCtgaaagGATTTTATAAAAATGGTCCACTGCCAGATGTACCTGACTGCAAACCCTGGGTTGAAGAAGGTTTTTGGGATCTGAAGAGATCAAACAACGCTATAATTGAAGAGGCCTACAAACAATTTAATGATGTCCTACATGAATGCAGACTGCTGAACAACAGGGCTGCTCATGTGATAGCTCAGACTGAAAGAGCTCTGAGCATGAAGAATCAGCCAAAGCAGTACGTCCTATGAAAccctgagcagcatttcacttcaGTGCAGTAGTCCTTATAACTTCAAGCAAATCAGTGTATAACATATCCTTTTGCTTTACACAGCATCAATGCCAGTATCCTTACATGCCTATGATATGGCAAGGGTAGCCTAAAGACTTGTAACTATTTGTGAGTATTGCACATCAGTCctgtttacaaatattaaatgaaatcaaaGCAGACGCACACATGAAGCCCCTCCGTTTCATGAAGGTGCTGTTCAGATGTTCTCCGTATGCAATAAGCATACTTCATGATTTTTCATAAGTTATACTTAACATTATTGCTTCAGAAGGAATGATAGTCTACAGTGTAGAACAATATGCAATTTTACTCTTTTAATGGGGCttctagttaaaaaaaatgaaaaacaccttttttgtatttagtgatatgcacattgcattttatcacctttttaaatgttgctatTATTCACTATGGTTTTCAGGCTTTAAAAGGGAGTTACATATCAAATATTTTCTATATGCACAGGTTTCCAACATAGCGTGCCTGCGATTTGTTTAAATCGACAACAcatttatgaattaaaatgaCACTCAACATCCACACAAGTGTTGCTCATATCAttgtacatttgaaagaaagtTGAATgacaagaaaagcaaattatacATAGAGTAAATTCTACAAACCTTGACTTTAATTGCAGTTCTACAGTGTTTATCATGGAAACCCTGACCTTCCTACCTCATCCACACAATCTCTTTCGAGGGAAGTAGTTACTATTAGATACAACtctagctgttttttttaactgaattatAGGTTTGCTTCTTGCTTggaaataatgtatgttttataagtCAGATTTTTATGTAACAAAGgtgtttaaattatgttttctgttatCAATTCCCCCAaactggcattttattttaggattCTTTAGTCAAGCTGTGCTTAGTGGGACTATGTGGGCTGACAAAccacgttttttgttttgttttggcgaGGATaatttgtatgctttcatgTCTGCTTTAATAGAAAGTaactaatatatgtatttggggttaaaacttattttcaaatCTTGTATATTTGAGACTTTCTACTGTGGTGTCAAGCTTTCTAACACTGTTTAATACAGCAGGACAAATCAAGTGGTTAAGACCAAACTGATGCTGTTTATAACTACCTTTGATGACTGCCTTTTTCctcacattgtttttgttaggtACATGAAAAATAGAACCTCACAACAATACAAAACctaaaacaatgtaacaatatttCCTTAAGATTCACAGTTGTGTGACATAATGATGATAAAAGCAACAATGTGCTGCATATcagattgtgtatttttaaaaatgggatATTTAatgccaataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32676 lncRNA upstream 79697 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 249422 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 281082 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 281082 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 871233 28104602 ~ 28109590 (+) True G25827
TU32753 lncRNA downstream 85543 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 322710 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 378460 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 385463 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 550770 29539683 ~ 29540062 (+) True G26196
AMCG00007756 mRNA upstream 43989 28932965 ~ 28936834 (+) True AMCG00007756
AMCG00007763 mRNA upstream 69257 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007752 mRNA upstream 204459 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007751 mRNA upstream 251105 28723123 ~ 28729718 (+) True AMCG00007751
AMCG00007753 mRNA upstream 263488 28701981 ~ 28717335 (+) True AMCG00007753
AMCG00007767 mRNA downstream 800 28989713 ~ 29000085 (+) True AMCG00007767
AMCG00007769 mRNA downstream 14371 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007765 mRNA downstream 35872 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007764 mRNA downstream 43841 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007766 mRNA downstream 70118 29059031 ~ 29071456 (+) True AMCG00007766
TU32501 other upstream 526116 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 886082 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4786342 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5787302 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6697865 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 14182 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 776915 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6622203 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9156071 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9179657 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile