RNA id: AMCG00007756


Basic Information

Item Value
RNA id AMCG00007756
length 1557
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00007756
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28932965 ~ 28936834 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCCAACCCGTGGGAAGATGGAGCGCAGGAAAGCGCCGGTCACCGGAGCAGAGTCGCAGGGGGAGAGCACTGAGGGCAGGCTGAGGGAGCTGGCTCTGAAGTGGTTCTCCGAGACACAGGCGCCACTCATTCTACACAATGGCAGCTTTCCAGACTGGTTTCAAGGATTCATCGCTAGAAAGGAAGCAGAAGATCAGCTCAGAGATAAGGAGCTGGGATGCTTTCTCATCCGACTCAGTGACAGAGCCATAGGGTACATCCTGTCCTACAAGGGGAGAGATCGCTGTCGACATTTTGTTATCAACCAGAATAAGGCTGGCCAATTCATTGTTTCGGGGGACACAGAGACGCATGATAACCTGACAGACTTGATAGAGTACTACAAGATCAGTCCCATCGAGCCCTTTGGAGAGTATCTCACATGTCCCTGCTCTGAGgcaGATAACCATGAACTGTATGATGAAATCCAGTTTGGTCAGAAGGGGAAACCTGTACTCAGTGTACAGGCTGTGAAGAGTATATGGAACCAGAGGAACGAAATGAGCTCTGAGGAGCCTCCTCCATTACCACCGAAAAGCAATAAGAAACTCCACAAGCTCTCTTCAGACTCTGCGTTTGAAAAAGCTGTTCCACTCGGCAAGGCACCACCAACACAGCACAAAAAAAGCCCATCTCTGAGAAATGCACTGAGCCGCTCACTGGAAGACAAAGGCACTGCGCACAGCCAAGTCCTGTACGCCCAGATCAACCAAAGTAAATTGGCAGATAAAACACAAGCTCCCACATCTAACAAAGAAACCCCAAACCGTCTGAAAGATCAACAGGGAGTCGGCAGTGTCCCCATCAAGAATGGGAGAAGGACGCCCAGCCCTCCTTCAAGCTGCATTTACTCCCAGGCACAGGAGCCCAAGACAGTCCAGAGCCAGGCCTCAGGGCCCAGGCCCAGTGACTCCACTGTGTACACCGAGCTCAGTCTGGTGGAATGCAGAAGTAAATCATTGCCGTTGCTTGATGACGGCTCCGATGACCATCATACCTACAGACTGTGCACCCCTCCACCCACCCCGGCCAAACTCTCGCCCACAATCCCCAGCAAATCCACCTACTATACCGTCCCCGAAACATACTCCCTTCAAGACCAGCATGCCACCTACAAGCTGCCTCCCAGTGTCACTCTTTGCAGTAGCAGCAGCCTGGACAAATTGTTTAACAATCCACTGTACCAGACAGTGACAAGAGTGTGTGCTTCACAGGACACAATGTCGGTGTCCTACAAAGAGCGAAGCAGCCACAAAGCCTTACGGGCCTCTTTCCCTCAAGCGCTGGATGAAGACCCCACCTATGCCCAAGTCCCCAATGAGACCATCTCCAACCACTTGTTTTCCGAAAACACCTACGAGCAGATTCCAGACAGGCATCACAAGATGAGCTCCGAGATGCAGCTAAACAACACGTATGAGACTATACCGGACAAGTCATCCAAGCAGTCTGAGTCTGTCTGGAGTCTAAAGaaTGACAAATGGCGAAGATTCTTTCCAGAATATAAAAAGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32676 lncRNA upstream 31839 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 201564 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 233224 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 233224 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 823375 28104602 ~ 28109590 (+) True G25827
TU32753 lncRNA downstream 137622 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 374789 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 430539 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 437542 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 602849 29539683 ~ 29540062 (+) True G26196
AMCG00007763 mRNA upstream 21399 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007752 mRNA upstream 156601 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007751 mRNA upstream 203247 28723123 ~ 28729718 (+) True AMCG00007751
AMCG00007753 mRNA upstream 215630 28701981 ~ 28717335 (+) True AMCG00007753
AMCG00007754 mRNA upstream 232903 28682184 ~ 28700062 (+) False AMCG00007754
AMCG00007755 mRNA downstream 43989 28980823 ~ 28988913 (+) True AMCG00007755
AMCG00007767 mRNA downstream 52879 28989713 ~ 29000085 (+) True AMCG00007767
AMCG00007769 mRNA downstream 66450 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007765 mRNA downstream 87951 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007764 mRNA downstream 95920 29032754 ~ 29055451 (+) True AMCG00007764
TU32501 other upstream 478258 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 838224 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4738484 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5739444 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6650007 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 66261 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 828994 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6674282 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9208150 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9231736 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile