RNA id: TU32688


Basic Information

Item Value
RNA id TU32688
length 3589
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00007757
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28894693 ~ 28921123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATCATGTTTCGTTTTGCGTTGGCTCTCTTCAAGTACAAAGAGGATGAGATTCTCAAGCTGCAGGATTcgatgtgtatttttaaatatctccGCTATTTCACCCGTACAATCCTGGATGCAAGCTGATGAACATTGCTTTTGTGGACATGAACCCATTCCCGCTGAGACAGATCCAGAACCGGCGCACGTTCCACCTGGAGAAGGTGAGACTGGAGCTGACAGAGCTGGAGGCCATCCGTCAGGACTTCCTGCGCGAGAGAGAGACCAACACTGACGGCAGGAACCTCATCAGTGATGACGAGGAAGACAACTAGCAAGGGCCAATCAGCATTCCGGCTCCTCCTTTGACTGGACGACTGAGAGATCCTCCTCTCCAGTCCTGTacttggatttttttatttgtatttgccgCCCACTTCTTGTTGTGtgttcaattattattgtatttgtttgtttgtttttaccctttattttattttattttttcaagcgTGACCTCTGAGAAAGATTAGGAACAAAAACAGATCCGTTTCCCTGCATTCCTGCCAATCGATTATGATTGTCAATTTtcacttaatattttttttccgaggaggaggggaggtgggggacaGTCTAGTATGATCAGGATTAAAGTGATTTAATCTGCCTTGCTAGTGAATACAGTAAGATTAGCCATTCAATATGATAGACTGAATTTatgctaattaatttaaagaattaTACAAATGGATGCAGTGCAAATCTATTTTGGTTAGGTTAATAACTGATTTGAGGTCAAACGCCAATAGAACTCGTATAATTTAACAGATTCTTGTATATTATTGCTTTAGGCGTAAGGCGTAGGTACAAAAACATAAAGAGGTCTGTCGTATATCGTAATGTAGATAGACTACATTTGATTATCCACCCCTCATCAACAGTCTTCTCCTGCGTTTTCTAGCACTTGGATCACTTTACTTTCAAGGTTCTGTGAAGGACTGCACCAGGCATCCTCTGGGTGGCCCAAACAGAGTGGCGAACACGGAGGGATTATTCAGATGCAAAGTCAACAAGGCCACTGGCAATGCAGCACATGCATGCAGGTTTTCAGATTAGACAGGTGTGTGAAACTGAGGTGTAATCCTTTCATCAGTGACTGCAACCTGGAAAATATTATTCTCTGGGAAGAAATGTGTGGTTCATGCCTCAGTGTTGAACTCCTTCTTCGCCTGACTTTAGTCATCTCCATGGCTCTCTCTTTCTGGATTTTTGCACATGTATTCTAGCTCACCCccaaactttgtttttctcatttttcaattattttaaaactcttCTTGATGCTCTTCCTGAAGTTGCACGCTGCTGGCGGGGCTAATTCCTCCAACTGGTGCTTTGCAGCTATGAGAAGACTGACCATTGTAGACTAACCATCTGTCCTATGAATGGGAACACAAACCAGCCAGCCCACCCATTCCTGTTGTACCTGCCTGGAAACAGTATTTCACGGGGCTTGATCTGTGTTGGTGCTAGGAGCCACTCTCTCTGTTCTCCCATATCCTTGCATTGGGAATTGAAAATGCTTCTGAACCTATTTACAATCTGCTGAGGAATGGGCACTTATCCTTTCACTCCAGAGCTTGTCGTACCTGTATGGTGTTACTTTGTACTGCTTGTCTTTGACAGGCCTCAACTTCAAGCACTTTTTACCCCtaatattaattatgaatttgcATAGTTTGCATTCAGTTTCcacaataaaaagcattttccaGGACTCCAGAGCTTACTGCACAAGCCACCAGTTATTGTGGAACCTTATCATGACTTCAGCTGTTCTGTTTGCTGATTAAGTTATGCCAGCTATTTGCATACAcaattatttctatttattttttaaaaagcattcacAAATAGTGGGCACATTCTCTAATATTGCGAACAGGAAGACATCGGGAAGGTGTGACTGAGGTCTCCACAAGAGACCCGACCAGCCAAGCCAATTGGTGGATGTTCATTGACTCAGATGTTTCCTCAATATCAATAAGAACTGGACACATATGACATATTTTACTATGGAGGACCTGAAGAGTGTAATAGGAGATGCACCACTCAAGTAAACATCTAAAGACAAGAATGTTGTGAATTGAAAGGTACTATGAGCTGTCTTTTTGCAGCAGCACTTTTAGTtctggccttgctattgtttCTTGGCTTGCACCTTCTGTGAAACAGGCAATTCTGATCTAATTACATATGAAGTACAttcccttttcatttttcacatctACCTAAAGAATGATACCTTTGCTTTTATACAGGatctttatattttcattgttagGAGTAGAAAGACTCAGATTTGAAGCACAGAAAAGTATAGAAATATTGTTTCGGACGTTTCTTTGTGATTTAGTGTAGTGATCTTTACAAATCAGACAAGTCGGTTCTGACCATCAAGATTTTGTTTACTCATTTCACTTCACAAAATTATGAAGCATAATAGtaggatttaatttttttcctcccttttttgtttgtttgtattagaCTCGTACTAAAGCCACTGagtcaaaaatgaaaatattattgaatataCTGTGAACGTATTCAGTCGCTTCTGTCAGGGTGTTTTCTACTACGAGAGCTGGTCTCTCTAATGACCTAATCTCTGTGATATCAGAGCTTTCTTATCTTCAGAATCGTTTTTTGTTTCCTCACAGTTCTGAAAGTCTACAAACTGAAGGTTTTTCTGCTTATCAGAATGTAATTGCAGTGACAACTTACAGTGAGTGCAGTGTTACTACCAACTGTATACTATGGCAGTTCTTTAGATGACTGAATGTTTACATGAATCTGAGACCAATAGCCcttgattgttttgttaattttgtttcccCTACTAAAACAGTCTTGAGTTTTATTCCTGGGGGCTCAGTATTAAAGGctgtacaaaatgttttctgttggaAGTGTGTACTGGCCACTGTGGACAGAAAAATACAACCAACTCTCTATGATAATTTTTTTCTGCCATTGAATCAACCAGGAAATTAAATGatacaacatttacatttttttacatttgtaaactgTATACAGCTTTAAGGACAGATTGTctttactaatttaaatgtgtaaactcCATGTATGTCAGTTAATTCAACCATCTAATTACAATGCTGTTGGAAGTCttcaaaacatcaaatgtaATTGATGGATTATGTATTGTACTCTTGTGTAGTAGAAACATACTACTTAAACTGTCTGCAAATCTAGATTTATACagcacttaaataaataaattcttaaTGTAATAAGTCATAGAATATGTCTGACTATTTAAATAAGCTAAAGTGGCACATTCAATACACCTTCTCTCCTTACAGATGTTTTGTATGATATTATCACACCAGAGCTTTCCTCAGTAGAATATCGATAATACTGATGGGAACTTACTTATTTTCTAAATCGGCTTCATGTCTTGAATGTCATATGAAGAACCATAACAGAATTTTACTTCTGCAAGTTCAAGAATCCTGTAGTTATATAGCATCATAAACATTACACTATAAGAATTGGCATTTTTGTATCGGTAGCATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32614 lncRNA downstream 160244 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 161699 28732764 ~ 28732994 (-) True G25985
TU32591 lncRNA downstream 192156 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA downstream 194844 28696465 ~ 28699849 (-) True G25972
TU32318 lncRNA downstream 1227621 27662224 ~ 27667072 (-) False G25768
TU32710 lncRNA upstream 102473 29001049 ~ 29001957 (-) False AMCG00007768
TU32742 lncRNA upstream 132834 29031410 ~ 29049165 (-) True G26092
TU32768 lncRNA upstream 332367 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 413042 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 467048 29365624 ~ 29366245 (-) True G26165
AMCG00007760 mRNA downstream 16676 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007761 mRNA downstream 28108 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007758 mRNA downstream 50887 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007762 mRNA downstream 132916 28754480 ~ 28761777 (-) True AMCG00007762
AMCG00007748 mRNA downstream 220431 28647011 ~ 28674262 (-) True AMCG00007748
AMCG00007759 mRNA upstream 53043 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007768 mRNA upstream 102831 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007770 mRNA upstream 181575 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007771 mRNA upstream 215804 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007772 mRNA upstream 335183 29233759 ~ 29256619 (-) True AMCG00007772
TU31949 other downstream 3263101 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3629742 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4626772 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4922028 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8421989 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5970859 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8341513 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8596335 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8669041 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8672381 37570957 ~ 37571488 (-) True G27439

Expression Profile