RNA id: AMCG00007759


Basic Information

Item Value
RNA id AMCG00007759
length 486
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00007759
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28951619 ~ 28960104 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGaatcttttctttctctgttgtaGGTTGCATGGAAGATACCACGAACTGGCACCTAATTTAGTACCAATGGACTACACTAATGACCCTGATGTTAAACTCCCTATACAGCTCATAGTAAACATGCCTGAATTAAAGGAGAATCCCTTTAAGGACCGCATTGTGGAGTCATTCTCTGAAGACGGGCAGGGCAACCTCAGCTTCAATGATTTTGTGGATATGTTTTCAGTTCTCAGTGAAATGGCTCCTCGAGAGCTAAAGGccatatatgcatttaaaatatatgATTTCAACACAGACAATTTTATCTGCAAGGAGGACTTGGAGAAAACCCTGAATAAGTTGACACGAGAGGAGCTCACAGCTGAGGAGGTGAATTTGGTGTGTGAGAAAGTGATCGAGGAAGCAGATCTGGATGGAGACGGCAAGCTAGCCTTTGCAGACTTTGAAAATATGATCTCCAGGGCTCCTGACTTTTTAAGGTAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0048884 neuromast development biological_process
GO:0007638 mechanosensory behavior biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32688 lncRNA downstream 53043 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 217170 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 218625 28732764 ~ 28732994 (-) True G25985
TU32591 lncRNA downstream 249082 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA downstream 251770 28696465 ~ 28699849 (-) True G25972
TU32710 lncRNA upstream 40945 29001049 ~ 29001957 (-) False AMCG00007768
TU32742 lncRNA upstream 71306 29031410 ~ 29049165 (-) True G26092
TU32768 lncRNA upstream 270839 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 351514 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 405520 29365624 ~ 29366245 (-) True G26165
AMCG00007757 mRNA downstream 30496 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007760 mRNA downstream 73602 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007761 mRNA downstream 85034 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007758 mRNA downstream 107813 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007762 mRNA downstream 189842 28754480 ~ 28761777 (-) True AMCG00007762
AMCG00007768 mRNA upstream 41303 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007770 mRNA upstream 120047 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007771 mRNA upstream 154276 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007772 mRNA upstream 273655 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007779 mRNA upstream 328965 29289069 ~ 29296557 (-) True AMCG00007779
TU31949 other downstream 3320027 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3686668 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4683698 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4978954 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8478915 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5909331 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8279985 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8534807 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8607513 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8610853 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000330_03779829_03785869.mRNA True 1575 mRNA 0.39 4 CI01000330 3779829 ~ 3786867 (+)