RNA id: AMCG00007762


Basic Information

Item Value
RNA id AMCG00007762
length 709
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00007762
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28754480 ~ 28761777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGCGCGCGCTCTTTGTTCACGGGAGCGAACTTTCTCCCGCGATGCGTTAGAGCTGACACCACTCGCACCTTTATCAATAAACACCCCAAGGACTTCATCGATTAACGTGATGTGTTCACGTTGCCCTGGGCTTCCCAATTGAAAGACAACGTAACGCATGCATGTTTATAGTGGCATACGCATGACAATTGTTCCTAAACTGCAGGCTGCTCTAAGTGGTGCACGGGGGGAGAGCATAgttgaagaaaatacattttaaaaaggacgCGCAGTTCGGACGCACATATGATgccacttaaaaaacaacaacaacaacaacaacaaccacaaaaacgTTTAAAGGTGTCGGTTCAAGACCAGGATGTCCGGCACTCGCACAGCAGATCAGTCTTGTTCCACTATCTGCCTACTCTATGTactGCAGATCCCtcttcacattttcaaaattgtagTGGTTGCTGAAGGGCCTGTGGTCTTTGGATGTCAGGAATTAGAGCAGACGCAGAAGTCAGTCACATGTGCTATATTCCAAGGAAAATTAGCCCTGCCCTTTTTTCCACTGACTGTTCACATGGAGAGAGTGCTGCCTGCCTGGCAGAGAATCACAATTGAATCCTTAATGGCAGTGTGTAAACGTCTGAAAAGCTGCCAGTACAATTCAAGTGACACTGGGATATCTAGCTCCAGGGCTGAATGCAACATGTGA

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32614 lncRNA downstream 20031 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 21486 28732764 ~ 28732994 (-) True G25985
TU32591 lncRNA downstream 51943 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA downstream 54631 28696465 ~ 28699849 (-) True G25972
TU32318 lncRNA downstream 1087408 27662224 ~ 27667072 (-) False G25768
TU32688 lncRNA upstream 132916 28894693 ~ 28898576 (-) True AMCG00007757
TU32710 lncRNA upstream 239272 29001049 ~ 29001957 (-) False AMCG00007768
TU32742 lncRNA upstream 269633 29031410 ~ 29049165 (-) True G26092
TU32768 lncRNA upstream 469166 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 549841 29311618 ~ 29311943 (-) True G26147
AMCG00007748 mRNA downstream 80218 28647011 ~ 28674262 (-) True AMCG00007748
AMCG00007749 mRNA downstream 117174 28624088 ~ 28637306 (-) True AMCG00007749
AMCG00007750 mRNA downstream 142239 28595995 ~ 28612241 (-) True AMCG00007750
AMCG00007744 mRNA downstream 173290 28579139 ~ 28581190 (-) True AMCG00007744
AMCG00007742 mRNA downstream 204934 28546752 ~ 28549546 (-) True AMCG00007742
AMCG00007758 mRNA upstream 15978 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007761 mRNA upstream 100801 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007760 mRNA upstream 104827 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007757 mRNA upstream 136189 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007759 mRNA upstream 189842 28951619 ~ 28960104 (-) True AMCG00007759
TU31949 other downstream 3122888 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3489529 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4486559 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 4781815 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8281776 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 6107658 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8478312 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8733134 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8805840 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8809180 37570957 ~ 37571488 (-) True G27439

Expression Profile