RNA id: AMCG00007765


Basic Information

Item Value
RNA id AMCG00007765
length 1529
RNA type mRNA
GC content 0.39
exon number 11
gene id AMCG00007765
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29024785 ~ 29032207 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agttttgtatcacAGACACTATGGAGGTTGTTTTGTTGCTCCTGGCAGGGCTGCACACCGCATACTGCTCCCCCCTGCTCTCTGTAGAAGAAGAATATCTGTTCAAGTCATGGACGTCCCAGTTCAACAAACAGTACGAGCCCGACGAGTACTACCGTCGCCTGCAGATATTCACTGAGAATAAGAGAAGGATTGACCGTCACAATGCAGGAAACCACTCCTTCACCAtgggtCTCAATCAGTTCTCTGACATGACCtttgctgaatttaaaaaatccttCCTTTTGAGAGAACCTCagAACTGCTCTGCCACTAAAGGGAGCCATGTCAGCAGCAGCGGCACTTACCCAGACTCTGTGGACTGGAGGACGAAAGGGAAGTTTGTCACACCTGTAAAGAACCAGGGTGCCTGTGGCAGCTGCTGGACTTTTTCTACCACAGGCTGTCTGGAGTCTGTAATTGCCATTGCAACAGGGAAACTCCTCTTTCTGTCAGAACAGCAGCTGGTGGACTGCGCTCAGGCGTTCGATAATCATGGCTGCTCAGGTCATGCATTTGAGTACATCAAATATAACAAGGGACTCATGACAGAGGAAGGTTATCCATACACTGCAATGGATGGCCCATGCAAGTTCAACCCAAAGGAAGCTGCAGCTTTTGTGAAAGAGGTCGTCAACATAACAAAATATAATGAAATGGAGATGGTAGATGCGGTGGCCAGATTAAACCCTGTAAGCTTTGCATATGAGGTGACGTCTGATTTCATGCACTACCAGGATGGAGTTTACAGCAGataCTTCTTTATTGAGCGGGGGAAAAACATGTGTGGGCTAGCAGCCTGTTCCTCTTACCCTGTGCCTCTGGTGTGAAGTATGAAGACATGAAGAAGACTGagacaaaaagggaaaatgaacacacaaactGCACTCTAGTTCTGTTTCTTTAGAATTCACACTATACTGTTTACAGGTCCATTGCagccttaataataatatttgttttaaatcaaagggAAGTACCATTTCTTAGTAACTGTGaacacattgttattttttaacaataactgcaaatttaagtaaaagtaaaagtattttCTGCACATATCTAAACTTGCATATTATTGAGTGCCTTGTTTtctaatattacatattactaCGCAAATCTCATATGGATGACCAGCCTGCATTGTTGCTCTATGACCATTAACTCCTTAAAGCATGCTGTTAATACattatgtactatatatatatatatatatatatatatatactgctcaaaaaaattaagggaacactccaAGTTCATAAATCAATGTTATGTGTTCCCTTATTctttttgagcagtatatatatatatatatatataaattcaaacTACTGAAAATGTTGATGTATAAGAAGCACAAATACATGTGTACAATATAATggagatgtatttttaaatcaatgcaatGTACTCTAGGACTTGCTCATTGAGATTGTCTGTTGCTTTtgtgcttttataaataaagtctgattttattgatttaa

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01366 CTSH; cathepsin H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32676 lncRNA upstream 123659 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 293384 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 325044 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 325044 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 915195 28104602 ~ 28109590 (+) True G25827
TU32753 lncRNA downstream 42249 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 279416 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 335166 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 342169 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 507476 29539683 ~ 29540062 (+) True G26196
AMCG00007769 mRNA upstream 18406 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007767 mRNA upstream 24700 28989713 ~ 29000085 (+) True AMCG00007767
AMCG00007755 mRNA upstream 35872 28980823 ~ 28988913 (+) True AMCG00007755
AMCG00007756 mRNA upstream 87951 28932965 ~ 28936834 (+) True AMCG00007756
AMCG00007763 mRNA upstream 113219 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007764 mRNA downstream 547 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007766 mRNA downstream 26824 29059031 ~ 29071456 (+) True AMCG00007766
AMCG00007774 mRNA downstream 226223 29258430 ~ 29288693 (+) True AMCG00007774
AMCG00007775 mRNA downstream 289024 29321231 ~ 29336890 (+) True AMCG00007775
AMCG00007773 mRNA downstream 307439 29339646 ~ 29342580 (+) True AMCG00007773
TU32711 other upstream 21012 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 570078 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 930044 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4830304 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5831264 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 733621 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6578909 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9112777 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9136363 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 9323722 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile