RNA id: AMCG00007766


Basic Information

Item Value
RNA id AMCG00007766
length 2281
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00007766
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29059031 ~ 29071456 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattggtggagcagcgcagatctgaaCCAATTGTCAACTAAGTGACGTCAAAGGTTGACCAATCAGCGACCAAGAGTCCTAAATTACGGAAGAGTTACAAAACAGCTCGGGAAGCGGGGCTTGCGTGGTCTGCACACGTTGCTGTAGGGCAGGCCGGAGCAGTCGCCTGTGTGCTCAGTGGAAGCAGATTGCAAAGAGCGGTATCTCACAATGCCAACCAGCGGCGAGGATACAGATGGATACCTCAGTCTGATTAATATTCGTCTTCCTTTTGTTAAATTGAAGCGCATACAGGAGTTGACCCCCACACCGGACCGGTCTGTAGCAGAGATGCTAAGCAGGTCTGCTCATGATACAGAAGCTTCTGAAAAAGAGAGGGCGGTGTCTCTGCCCGAGGGTCTGCACCCCAAACAGCTGGTATACAGGTCTCCAAACATGGAGGCTGCTGTGCCCAGACGAGGCATCAAAAGAAAGGCTCCTCCTGGTACTTTGTCCTTGTATGAATTTAAGCGCTTGAAGAACATCAGACAAAACCAAGAATTTCTCTCATCAATGAACATTAAAGAGacTACTGCcgctttgaaaaataaacctgcCCGGCCACCTGTGAAGAAgTACAAGTCAGTCCTCAGCAGCATGAGTCTGACTGAAACCCGTGTGGTCAAGGTTGTGAAGGAGCGTGTGGTATCCATGGCCATCCACCCCTGTACCAGCAGGCTGCTGACCGCTGTGGGGGACAAGTGGGGACAACACAGGGACCCTGATGAGGGGGTGCTCCAGTTCCTGCCCCACTCTCGCGCTGCCTGCTGCCTGGACTTCTCCACCTCTAACCCGGCTCACCTGCTCTCTGTCAGTTACGATGGCACTATGCGTGCTGCTGACATCAATAAAGCAGTCTTTGATGAGGACATCCCATAAGTCCAGGTCCACACTTCACTCCAAGACTGTCAGGACAGTCCACATGCACCCTGTTAACAGGCAGTATTTTGTGGCAGCAGGGAAGGGtaatGTGTACATTTACGATGTCCGGCGCCTTAAGCCAAAAGGGACTGAGGCAGTGTGTTCCCTGCCGGGTCACCGCTCAAGTGTTACTTCGGCCTATTTCTCCCCCAGCAGCGGACACAGAGTGGTGACCACCTGCTCGGACCACATGATCCGAGTATTCGATACTTCTACATGCAAGGGCGAGGCTCCCCTCCTAAATTCGATAAAACACATGAACACAGGCCACTGGCTTACCAAGCTGTGTGCCGTGTGGGATCCCCAGCAGGAGGACTGCTTTGTGGTGGGCAGCATGGAGCGGCCACGGAGGATGGTGGTGTTCCACGAGAGCGGCCAGATGGTGCACAACTTCTGGGATGAGCAGTGGCTGGGCTCTGTTTGCTCGGTCGCGGCCTTCCACCCTAGCAGGAACATCCTCGTGGGGGCCAACTCTAGTGGCCGCCTGCACGTCTTCATGAACTGAGAGCCAGAGTGGCCCAGCCAGCACAGCTGTCCCACACTGACTGTATCGCACTGCTTCATTTGATCTGTTTATTTGCTGTTATTAATGTTGTCTTTCATCtacaatgagaaaaatattttatttgtttttgttgtgtgtgctAAGTGCTCTGATAAGTTTCCATTAGATGCtgctaaataaatgtgattggtttagatttttttgattatttttaaatgtattcaactgAGAGATATAAGTAGAGcattatgcttttaaatacagaatCAATTTCAGTCTATATggcacaatattttaaaagatcagTTTCAGTGAACGGCTTTTGgctttttgctttttgcaaGACACCAAGCAACATGAAGGGATGCTGCCATTGAATTCTCCTGGATGTGGTTTTATGTATCGCAAGTACTTGCATGCTTTGCATGCTTTCAACTTGGGAGGGAAGTTTTGTTCGCTATTGTTTTGTGGTCAATAATGGTTTTGCATTATTTCCGAGAACAATAACGCAAAAATGATCTGTTCACTCTGAATTGAACGGTCTATTTTCGCTGTCTACTTTGCGTTGTTTAGATGTACTCATTGGGTTATTGGAACTCTTCAGATAGACTGCAGGTGACTGAAAGTGTGTAAACTTAATCCTTATTTTTCTCTCAGCttgaattttttatttatttttcctgatgGAGTGTGGATGTGGTTGTGATGAGTTGTTTGCTAATGGAAAAAATAGAACTTTTATCCTGTTTTATGAGTTCTTAttctgtattgcattttattttttgtaatttcactttGCAATATGCAGAGAATCCG

Function

GO: NA

KEGG:

id description
K24755 WDR76, CMR1; WD repeat-containing protein 76

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32676 lncRNA upstream 157905 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 327630 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 359290 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 359290 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 949441 28104602 ~ 28109590 (+) True G25827
TU32753 lncRNA downstream 3000 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 240167 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 295917 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 302920 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 468227 29539683 ~ 29540062 (+) True G26196
AMCG00007764 mRNA upstream 3580 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007765 mRNA upstream 26824 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007769 mRNA upstream 52652 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007767 mRNA upstream 58946 28989713 ~ 29000085 (+) True AMCG00007767
AMCG00007755 mRNA upstream 70118 28980823 ~ 28988913 (+) True AMCG00007755
AMCG00007774 mRNA downstream 186974 29258430 ~ 29288693 (+) True AMCG00007774
AMCG00007775 mRNA downstream 249775 29321231 ~ 29336890 (+) True AMCG00007775
AMCG00007773 mRNA downstream 268190 29339646 ~ 29342580 (+) True AMCG00007773
AMCG00007776 mRNA downstream 279614 29351070 ~ 29351882 (+) True AMCG00007776
AMCG00007777 mRNA downstream 283595 29355051 ~ 29361487 (+) True AMCG00007777
TU32711 other upstream 55258 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 604324 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 964290 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4864550 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5865510 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 694372 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6539660 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9073528 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9097114 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 9284473 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile