RNA id: AMCG00007767


Basic Information

Item Value
RNA id AMCG00007767
length 1866
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00007767
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28989713 ~ 29000085 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATGCTCTAGGTGGGTGGCGTCACAATGACTCGTGTTCACCCGGAAAAGGGCTTTGCTGTGCAGGAAGCGCATGTAGGGAGCCGCGGGACAGTACGGTACTACTGATAGACTGCACGGAAGCTAGCGCAGAGACAATGGCTGGAAACGCGTGGAGGTCAACGATCTTAAAGCTACTGGAAAAATATGGGTTACGGGTAGCCGGCAAGAGTAACACGCAGACACAGGAAGTGTCCCGTGTCATTGCTGCTGTAAAGAGCCAGCCCTCAGTCACAAGAAGTTATGGCAGCGGGgcACAGACTGTAACACTAATCCCCGGGGATGGAATTGGACCAGAAATTTCAAGTGCTGTGATGAAGATCTTTGAAGCTGCCAAAGCTCCAGTTCTGTGGGAGGAGAGAAATGTTACTGCGATTAAAGGCCCAGGAGGAAAGTGGATGATCCCTCCTGAAGCTAAAGAGTCGATGGATAAAAGCAAAATTGGATTAAAAGGTCCTTTAAAGACTCCCATTGCTGCTGGCCATCCCTCCATGAACCTGCTGCTTCGGAAAACCTTTGACCTTTACGCCAACGTGCGCCCATGTGTTTCCATCGAGGGCTACAAGACGCCCTACACTGATGTGAACCTTGTCACCATCCGAGAGAACACCGAGGGGGAGTACAGTGGCATTGAGCATGTGATTGTCGATGGAGTTGTACAGAGTATAAAGCTGATCACTGAAGATGCCAGTAGGCGTATAGCGGAGTTTGCATTTGAGTACGCCAGAAATAACCAGAGGAGCACAGTTACGGCAGTTCACAAAGCCAACATTATGCGTATGTCTGATGGACTTTTTCTGAGAAAATGTCGGGAAGTCGCTGAGAACTACAAGGATATTAAATTCACAGAGATGTATCTGGACACTGTGTGTCTGAATGTAAGATGTGACCTCTTTCTGACATTCgtattgaaataaaaagtgtttgatATTTCGTAAGTTTTCGCTTTCTTTTTAGATGGTGCAAGATCCAACACAATTTGATGTTCTGGTAATGCCCAACTTATATGGTGATATCCTGAGTGATTTGTGTGCTGGGTTGATCGGAGGCCTGGGTGTGACTCCTAGTGGGAACATTGGAGCCAATGGAGTTGCCATATTTGAATCGGTTCACGGCACTGCTCCGGACATCGCCGGCAAGGACCTGGCCAACCCCACTGCCCTGCTGCTCAGCGCTGTGATGATGCTGCGTCACATGGGGCTCCACAGTTACGCCACGAAAGCAGAGCGTGCCTGCTTTGACACCATCAACGACAAGAAGGTTCTGACCAAAGATCTTGGAGGAAACTCAAAATGTTCAGAATTCACAAACGAAATCTGCCGCAGAGTACTTGACATGGATTAAGACCCCTTCTCGGCTGCAATGGTGAAAACGGATAAATACATCAGTTACTTTAAAACCCTCCAGATCCATAGCATCCTGGTATATACAAACATTTCTattgtataaatacaaaaaaaactaactacTGTGGTTGACTTCtgaatgtctttcttttctgaaaacacaaagcagtgtCTTACACTTTGTTGTCTTTTGATTAGTGTCGGTGTACtttatttgcaaataattgctttaaatattctttatttattgaccAAAAAagcctttgattttttttattttggtaaaactCCTGTTTCGTCGGTGATGTAATATTGTCTGTCTCCAGAATCCCATTAAAGGGAAAGATGTTTTGAACCATGTTTTATCCTTCTTTTGTATTATAACATTTGGTGAGTCACTggttttgtgaagaaaaaaaactaaagttgcAGTATGAAATGTTACCTAAGCATACCTATTAAAATTTAATTCTTGCTCAAA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32676 lncRNA upstream 88587 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 258312 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 289972 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 289972 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 880123 28104602 ~ 28109590 (+) True G25827
TU32753 lncRNA downstream 74371 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 311538 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 367288 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 374291 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 539598 29539683 ~ 29540062 (+) True G26196
AMCG00007755 mRNA upstream 800 28980823 ~ 28988913 (+) True AMCG00007755
AMCG00007756 mRNA upstream 52879 28932965 ~ 28936834 (+) True AMCG00007756
AMCG00007763 mRNA upstream 78147 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007752 mRNA upstream 213349 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007751 mRNA upstream 259995 28723123 ~ 28729718 (+) True AMCG00007751
AMCG00007769 mRNA downstream 3199 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007765 mRNA downstream 24700 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007764 mRNA downstream 32669 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007766 mRNA downstream 58946 29059031 ~ 29071456 (+) True AMCG00007766
AMCG00007774 mRNA downstream 258345 29258430 ~ 29288693 (+) True AMCG00007774
TU32501 other upstream 535006 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 894972 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4795232 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5796192 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6706755 22281700 ~ 22282958 (+) True G24606
TU32711 other downstream 3010 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 765743 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6611031 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9144899 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9168485 38168570 ~ 38170061 (+) False AMCG00007952

Expression Profile