RNA id: AMCG00007768


Basic Information

Item Value
RNA id AMCG00007768
length 1812
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00007768
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29001049 ~ 29013947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCAGGAGTTTATGATAGATCTCAATGCAGAGGAGCCGACAGACTGCCAGCAGGAGAGGGCCAAACGGGCGATGGTGGATGAATCACGTGAGGAGAAGAGGAGTGTACAAGAGGTTCTAGCCAGTGTTCCTCTGGCCCCAGCAGCGTCTCTATGGACAGCGCGGGCCGATGGGGCAGTGAAGCTGAGGATAGACGAAACCTGCCCGCAGACCCCCATCACGGTCCATCAGATGTTTAAAACCTCGGTGGAAAAGTACGGCAGCCTGTATGCCCTGGCCTCCAAGAAAAATGACAGATGGGAAAAGGTCACCTTCTCAGAGTACTACAGCCTGTGTCGGGCAGCGGCAAGGAGCTTCCTAAAGCTTGGGTTACAGAGGTTCCACAGCGTGGCTATCCTTGGATTTAACTCTGCCGAGTGGTTCATTTCTGCAGTCGGTGCCATCTTCGCAGGAGGCATAATGACTGGAATCTACTCAACCAATTCCCCGGAGGCTTGTCACTATGTGGCCAGTGACTGCAAAGCCAATATCATTGTGGTAGAAAACCAAAAGCAGCTGGAAAAAATCTTTCAGttatatttgtttttcccaaaaGATAATCCAGCTCTACAGTATTATATAAAAGCCAACTATTTACACAGGTTGCTTTTTTCTCAGTTGGGGTTATTGTCATTTCAGATCTGGGACAGGCTGCCACATTTGAAAGCCATTGTCCAGTATGTTGGACCACTGCAAAAGAAACTGCCTAACCTTTATTCGTGGGATGAGTTCATGGAACTGGGATCAGAAACCCCTGAGAAACACCTGGATGACATCATCAGCAGCCAGAAACCCAACCAGTGCTGTGCTCTGATTTATACCTCGGGAACCACAGGGAAACCCAAAGGGGTGATGCTGAGCCATGACAATATCACCTGGACAGCGCATCATGCCAGCAGGGTAGGGGACATGCAGCCTGCTGACACCAAGCAGGAGGTCCTGGTAAGCTACCTGCCCCTCAGCCACATCGCTGCACAGATATACGACCTGTGGACGGGCATCCAGTGGGGCGAGCTGGTTTACTTTGCACAGCCCGATGCTTTAAAGGGAAGTTTAGTCAGCACTTTGAAAGAGGCTTGCCCTACCTCCCACATGGGTGTTCCTCGGGTGTGGGAGAAGATGATGGAAAAGATTAAAGAAGTGATCACACAGTCTGgctttctgaaaaaaaagatGTTGACTTGGGCAATGTCTGTCAGCTTGGAAGCCAATTTGAACTGGGCCAAAAAgaatGAAGCGAAACCATTTCTATTCACTCTTGCAGACAGCCTTATCTTAGAGAAGGTCCGCGCCGACCTGGGCTTCTCACACTGTCTGAAGTTCTTCTCAGGGGCAGCTCCCATCACCAGCGAGACTCTGGAGTTCTTTCTGGGACTCAACATTCTGCTGTACGAGGCCTATGGAATGAGTGAAACTACGGGGCCACACTTCATGTCAGGCCCGAAGtgtgtgtgtaatccaGAGACGACAGAGCCCACAGATGAACTGAGTCTCGAAGCTATTGAGTTTTGCCAGCGGATTGGCAGCCAATCAACAAAAGTGTCCGACGTGATTGGAGGGAGAGACAAGGTGTTGTACCAGACCATTCAAGAGGGAATAGACAGGGTGAACAGGAGAGCCACGTCCAACGCTCAGCGCATTCAGAAGTGGACCATCCTGGAAAAAGACTTCTCTATTCCAGGTGGAGAATTAGGCCCCACGATGAAGCTTCGGAGACCATGCGTCCTAGAGATGTACAGGGATGAAATTGAAAAATTCTACACAGAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32688 lncRNA downstream 102831 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 266958 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 268413 28732764 ~ 28732994 (-) True G25985
TU32591 lncRNA downstream 298870 28676840 ~ 28702537 (-) True G25968
TU32742 lncRNA upstream 17463 29031410 ~ 29049165 (-) True G26092
TU32768 lncRNA upstream 216996 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 297671 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 351677 29365624 ~ 29366245 (-) True G26165
TU32901 lncRNA upstream 594370 29608317 ~ 29608596 (-) True G26231
AMCG00007759 mRNA downstream 41303 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007757 mRNA downstream 80284 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007760 mRNA downstream 123390 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007761 mRNA downstream 134822 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007758 mRNA downstream 157601 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007770 mRNA upstream 66204 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007771 mRNA upstream 100433 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007772 mRNA upstream 219812 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007779 mRNA upstream 275122 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007780 mRNA upstream 362299 29376246 ~ 29377079 (-) True AMCG00007780
TU31949 other downstream 3369815 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3736456 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4733486 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5028742 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8528703 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5855488 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8226142 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8480964 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8553670 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8557010 37570957 ~ 37571488 (-) True G27439

Expression Profile