RNA id: TU32710


Basic Information

Item Value
RNA id TU32710
length 719
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00007768
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29001049 ~ 29013947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTACTAAGTGAATTGCATCGgattgtgttgcagtgtgtgtgtaatccaGAGACGACAGAGCCCACAGATGAACTGAGTCTCGAAGCTATTGAGTTTTGCCAGCGGATTGGCAGCCAATCAACAAAAGTGTCCGACGTGATTGGAGGGAGAGACAAGGTGTTGTACCAGACCATTCAAGAGGGAATAGACAGGGTGAACAGGAGAGCCACGTCCAACGCTCAGCGCATTCAGAAGTGGACCATCCTGGAAAAAGACTTCTCTATTCCAGGTGGAGAATTAGGCCCCACGATGAAGCTTCGGAGACCATGCGTCCTAGAGATGTACAGGGATGAAATTGAAAAATTCTACACAGAATGAACAGACAACACTAAGGCACTGTGTACTAGTtagtctgtttttgtcttttttgttttagcacACCCATTTGATTTCATGGTATTGGTTCTATACCAAAtgtatggatttaaaatgttagcGGGTTTCTGtcgtgtaatttttttttttttttgagtacATTATTCTGCAATGTCACCTTCATGTATTTCATCATAATATAGTATTGTCCATTTGTAACCATGCTCGAGCAGTTTTAACTCCATTGTAATTTAAAGGGTGCTGGTATATTTTTGGGAAGTGTTAAACAAGTCATATAACAAACTATTTGGTTTTGGTGGGACCTCTACATCAATGTATTAAACCTTTCTTATTCACAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32688 lncRNA downstream 102473 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 266600 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 268055 28732764 ~ 28732994 (-) True G25985
TU32591 lncRNA downstream 298512 28676840 ~ 28702537 (-) True G25968
TU32595 lncRNA downstream 301200 28696465 ~ 28699849 (-) True G25972
TU32742 lncRNA upstream 29453 29031410 ~ 29049165 (-) True G26092
TU32768 lncRNA upstream 228986 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 309661 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 363667 29365624 ~ 29366245 (-) True G26165
TU32901 lncRNA upstream 606360 29608317 ~ 29608596 (-) True G26231
AMCG00007759 mRNA downstream 40945 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007757 mRNA downstream 79926 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007760 mRNA downstream 123032 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007761 mRNA downstream 134464 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007758 mRNA downstream 157243 28777755 ~ 28843806 (-) True AMCG00007758
AMCG00007770 mRNA upstream 78194 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007771 mRNA upstream 112423 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007772 mRNA upstream 231802 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007779 mRNA upstream 287112 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007780 mRNA upstream 374289 29376246 ~ 29377079 (-) True AMCG00007780
TU31949 other downstream 3369457 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3736098 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4733128 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5028384 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8528345 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5867478 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8238132 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8492954 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8565660 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8569000 37570957 ~ 37571488 (-) True G27439

Expression Profile