RNA id: TU32711



Basic Information


Item Value
RNA id TU32711
length 453
RNA type TUCP
GC content 0.45
exon number 2
gene id AMCG00007769
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29003095 ~ 29006379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cgggtacacaatattaggcagatgttatggctgatcggtgtatggtTAATAAAAGCATCAGTCTGTTTCAGTGCTCTTCCTTTGATTCCTTATAGCTGTGGAAAGGTGGTTCCTGGCTGCAAGTTCAAACTGAAAGACAAAGAAGAGGAAGGCAATGGAGAAGTGTGCTTCTGGGGGAGGAACGTGTTCATGGGCTACCTGAACATGGAGGACAGGACCGCAGAGTCTCTGGACGAGTATGGGTGGCTGTGCTCAGGGGATTTAGGGAAGACTGACAACGATGGATTTCTTTACATCACAGGACGGATCAAAGAATTAATTATTACAGCCGGCGGTGAAAATGTCCCTCCAGTGCCAATTGAGGATTCTGTGAAAAAGGAACTTCCTATTATTAGCAATGCCATGCTGATTGGGGACAAAAGGAAATTCTTGTCAATGCTGCTTACTTTAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32676 lncRNA upstream 101969 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 271694 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 303354 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 303354 28682171 ~ 28699741 (+) False AMCG00007754
TU32410 lncRNA upstream 893505 28104602 ~ 28109590 (+) True G25827
TU32753 lncRNA downstream 70683 29074456 ~ 29082381 (+) True G26103
TU32804 lncRNA downstream 307850 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 363600 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 370603 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 535910 29539683 ~ 29540062 (+) True G26196
AMCG00007767 mRNA upstream 3010 28989713 ~ 29000085 (+) True AMCG00007767
AMCG00007755 mRNA upstream 14182 28980823 ~ 28988913 (+) True AMCG00007755
AMCG00007756 mRNA upstream 66261 28932965 ~ 28936834 (+) True AMCG00007756
AMCG00007763 mRNA upstream 91529 28900259 ~ 28911566 (+) True AMCG00007763
AMCG00007752 mRNA upstream 226731 28766715 ~ 28776364 (+) True AMCG00007752
AMCG00007765 mRNA downstream 21012 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007764 mRNA downstream 28981 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007766 mRNA downstream 55258 29059031 ~ 29071456 (+) True AMCG00007766
AMCG00007774 mRNA downstream 254657 29258430 ~ 29288693 (+) True AMCG00007774
AMCG00007775 mRNA downstream 317458 29321231 ~ 29336890 (+) True AMCG00007775
TU32501 other upstream 548388 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 908354 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 4808614 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 5809574 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 6720137 22281700 ~ 22282958 (+) True G24606
TU32939 other downstream 762055 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6607343 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 9141211 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 9164797 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 9352156 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile