RNA id: AMCG00007770


Basic Information

Item Value
RNA id AMCG00007770
length 3099
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00007770
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29080151 ~ 29100489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatctcgTCTTCCTGCAGATCAAGAGAGATCTGTACCATGGCCGGCTGCTGTGCAAAACGTCAGACGCTGCCATCCTCGCCGCTTACATCCTTCAAGCTGAAATTGGGGACTACGACCCAGGCAAGCACCCTGAAGGCTACAGCTCCAAGTTCCAATTCTTTCCAAAACATTCAGAGAAGCTGGAACGACGGATCGCAGAGATTCATAAGACTGAGCTGAGTGGGCAGTCCCCCGATACGTCCGAGCTGAACTTCCTTCAGAAAGCCCAGATGCTGGAGACATACGGCGTGGATCCACATCCTTGCAAGGACGTGTCGGGGAACCCTGCCTTCCTCGCCTTCACCCCTTTTGGGTTTGTGGTGCTTCAGGGAAACAAGAGGATCCATTTTCTTAAGTGGAATGAGGTGACAAAACTGAAGTTTGAAGGAAAGACATTCCATATATATGCAAATCAGAAGGAGGACAAAAAGATCATTTTGACATACTTTGCACCAACACCTGAAGCCTGCAAGCATCTGTGGAAGTGTGGAGTGGAGAACCAGGCCTTCTACAAGCTGGAGAAATCGAGCCAGGTGCGCACCGTGTCCAGCAGTAACCTATTTTTTAAGGGAAGTCGGTTCCGATACAGAGCTGGTTTGGTGCCCAGCAGGAGCTGCCCATCCATCACCCACGGGCCACGCCTCAGCAGCGTGCCACGCACACGCCGAAGAGCTGTACACATATCCATCATGGAAGAAGGGGCCACCATGGTGAAGTGCTTGATCAAGATCAAAACCAAGGTGAACGTTCACCTGCGGATGATCAACCACTGCTACCGTGATGTGAAGGTGCGGGTCTTGAGCCTGGGGCCGCGGATCTTTGGCAAGGCACTGGGTGCTCTCCCAATTTTCCCAGCTCTGGCCAGTTACAGCCATTCTGACCAGCCCCTCTCCTCCCCACTGCTGGGCACTTCGCAGAGCTTCTCCCAGCCGGGCACCTCCACCACCTCCGCCAGCACCTCTGCAGGTCTGGAGTCCCTGCGTGACAGCGCCCACTCCACCCCAGTGCGTTCGGCCTCCCATGGCGACTCGTTCGTGCCACGTTCCCGCAGCCTGGTGACGGACAGCTGCGAGGGGGGCAGCGCCGTGATCTCGGACGAGATTTACAGCCCCTCACATAGCGTGCTGCCCACCCCCGTTGCCGAGCACAGCCTGGAGCTGGCCGTCGCGAGGCAGATCAACGGTGCCCCATGCAGCATTGAAGAGGAGAAAGAGTCAGAGGCAGGGACCCCCATATCCGGAGACATGATTGAGTTCGGTCCCGATGGTAAAGTCCTGAACCCTGACCACTCCAGGGAGGCCGGGGGGGCGTCCTCACTGGGCGAAGTGGAACAGGTGAATAAGTTTGTTTTAAGTGTCCTCCGTTTGCTCCTTGTGACCATTGGACTCCTCTTTGTCttgctcctcctcctcatcgTTCTTACCGAGTCTGACCTTGACATTGCATTTTTACGTGATATTCGGCAAACCCCTGAGTTTGAGCAGTTCCATTACGAATACTTTTGTCCCCTCAGGCGATGGTTTGCCTGCAAGTTCCGCTGGCTGGTGGGCCTGCTCATTGACACGTGAAAAACAAGGGAAAAATGGGCTGTAATACCGGctgcccccccctctctcctcccccatGGGGGATCAGAGAAGATGATAACACAACTACTGCTGCAGTTTCCAACATCACAATGATGGAGTGCGGCAACCATCTGACCATGAACCCAGCTTCCCTCATGAAAACTGCAGACACCGCGTCATGGAAGTCTCCTGGACAGATtctgaagactttttttttttttttttttgcgttcctcttttcacatttctttttaaagaaaaaagggataaactgattatatatatttttttctattattactTTCTTTTCTCCAAAATATCAGGTCATTGcaggaattttatttttacaaaaaatctaaatgaaaaacgacaaaaaaacaacagacaaatcaaatgaaaacagtgCGCACAGTTCCTTTTGGAGGGGAAAACGAAGTGAAACGTTATGAacggagattaaaaaaaatgccttcTTTATCttctatttattcattttgatgTCAGTtgttatttgctttaaaaaaattgtgaaaCATACAGTTTGGAGAGATGTTTATCATAGGTATTCCATTATGTTGTAACAAtggtattaaaaaacaaatgagattGAAGTTTTATAGATGggtaaaaagcaaacaaagctgAGCTGACAGAATTCCCATTTTCATCTTGGCAATTCTGCTGATTTTCTTTAACTTGCAAATGGAATTGAAGTGAGAAGTGAACGCCTGAGGCTGACAATTAGGTCCAAGTTTGGTAAGAACATCTGAAAATTGGGACCTGAGGGTAATTATCGTAAGCAGAAGTGGAGAGTTATACATATTGCAAGGGACGTCACAGAGATTTAAAGCATTGTCAATAAGgcttcaaatgtattcttttaGAGAtgccatatttttttaaaaaacaaaagcaacttTACTAATCTGTGCACACTTTGTGTTGTGGCGGGAAGGTTGACAGAGAGCGGGGGCAGAATGAGCAAATAGCGGTTCTTGAATTTTGCTGTCTTATTTCAAAGAGCTTCAAATATACTTTCATAGGAATTCAATTATGTGTAAGCAGTAGCAAGCTGTGTAGtagaattcagatttttttaaataatatattaaaaagaatacaattaaattaaagtttaataacTTAAATAGTTAAAATGGTGTACTGTTATGTGACCTAGCAGTGTCAGTACCTGGTAGAAAAGTGTTAATGGTCTACCCCCCGAAGACATTTACTAACACCTGTAGATCCAGTTTAGCTAGATGTGCAATATAATAAAGCTATGGTTTTAGTgcaaaaaaaagtttcaaaccTTTTGTTCGTGTGCATTTGTTAGTGCATCAGcatttttccttgttttgtttttgataactCTTCCCAATTGATTTCCAAGTACAATATTAAGAAGAGACATGAAAAGTGGTggtttttcaatttaaatctgGGTTTTCAAATCCAAATTGACTATGCTATTaagtttttaattgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32742 lncRNA downstream 30986 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 78194 29001049 ~ 29001957 (-) False AMCG00007768
TU32688 lncRNA downstream 181575 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 345702 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 347157 28732764 ~ 28732994 (-) True G25985
TU32768 lncRNA upstream 130454 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 211129 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 265135 29365624 ~ 29366245 (-) True G26165
TU32901 lncRNA upstream 507828 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 1304509 30404998 ~ 30454628 (-) True G26342
AMCG00007768 mRNA downstream 66204 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007759 mRNA downstream 120047 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007757 mRNA downstream 159028 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007760 mRNA downstream 202134 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007761 mRNA downstream 213566 28862578 ~ 28866585 (-) True AMCG00007761
AMCG00007771 mRNA upstream 13891 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007772 mRNA upstream 133270 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007779 mRNA upstream 188580 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007780 mRNA upstream 275757 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007778 mRNA upstream 278555 29379044 ~ 29386305 (-) True AMCG00007778
TU31949 other downstream 3448559 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3815200 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4812230 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5107486 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8607447 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5768946 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8139600 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8394422 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8467128 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8470468 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027119 True 4234 lncRNA 0.39 2 NC_007129.7 26456681 ~ 26461427 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_00657437_00692874.mRNA True 1620 mRNA 0.53 13 CI01000013 657437 ~ 692874 (+)