RNA id: AMCG00007771


Basic Information

Item Value
RNA id AMCG00007771
length 309
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00007771
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29114380 ~ 29122313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTATGGGTGTGATTTCAATGTTGCTCTTTTCTTCCAGAGGGATGCGAAGGGACAGTACCTGTTTGACCTGATCTGCCACCACCTAAACCTGCTGGAGAAAGACTACTTTGGCATCCGCTATGTGGACCCTGACAAGCAGAGGCATTGGTTGGAGTTCACAAAGTCAATTGCCAAGCAAATGAAATTCGTTGCAGTGGTCATTCTCATCCTCTCTCTGTACTCTACAGCCCAGCCACCATTCACCATGTGTTTTCGGGTCAAGTTCTACCCACCGGACCCTGCTGCTCTGAAAGAAGAAATCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32742 lncRNA downstream 65215 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 112423 29001049 ~ 29001957 (-) False AMCG00007768
TU32688 lncRNA downstream 215804 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 379931 28734112 ~ 28734449 (-) True G25987
TU32612 lncRNA downstream 381386 28732764 ~ 28732994 (-) True G25985
TU32768 lncRNA upstream 108630 29230943 ~ 29232708 (-) True G26115
TU32805 lncRNA upstream 189305 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 243311 29365624 ~ 29366245 (-) True G26165
TU32901 lncRNA upstream 486004 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 1282685 30404998 ~ 30454628 (-) True G26342
AMCG00007770 mRNA downstream 13891 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007768 mRNA downstream 100433 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007759 mRNA downstream 154276 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007757 mRNA downstream 193257 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007760 mRNA downstream 236363 28866604 ~ 28878017 (-) True AMCG00007760
AMCG00007772 mRNA upstream 111446 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007779 mRNA upstream 166756 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007780 mRNA upstream 253933 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007778 mRNA upstream 256731 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007783 mRNA upstream 283075 29405388 ~ 29427475 (-) True AMCG00007783
TU31949 other downstream 3482788 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3849429 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4846459 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5141715 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8641676 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5747122 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 8117776 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8372598 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8445304 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8448644 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067737 True 510 nonsense_mediated_decay 0.49 7 NC_007118.7 30150996 ~ 30174715 (-)