RNA id: AMCG00007772


Basic Information

Item Value
RNA id AMCG00007772
length 3631
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00007772
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29233759 ~ 29256619 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAAGTGGCTTTTTCGTGAACTCAAAACATGAGCGACGCCGctctgtgtctgcctgtctgggATTAAGGGGGCGATGCACAGCTGGGGGAGGATTTTAATGTCAGGTGAATCCGCGctccttttgtgttttgatttgtgatCACGGTACACGTTTGCTTTTAAAACGTCTTCTTTCGTGTTGCAGCAGAGCTTTCCAGAACACCTCCAGCTGCGTTTGAGCGTGAACTTTTATACAGTAACTGGAAAGAAATCTGCTGGCTCATATAACTACACCACGGTTTTCCTGCACTGCAGAAACTCAATGGAAGATACTACACTTTGTCAAGGACCTCCCTATTTAGATATTGTAATAACACAACATCCAGTGTCTGCGAGTGTCCCACTGAATTACACTCTCACTCTGAGTTGCCGAGCAATAGGCTCCAGCACCCTACAATATCAGTGGTTCCAGTCAGAAAATGAAGAGgtTCCTGGTGGTAATCTGCCAGATTTGGTCATTGCTGCCAAGAAAACCCAAGTTTACATATGCAGGGTGAATGATCAGTACAGTAACTGTGTGTTTAGTGAATGGGTTAAAGTCAAAGTCTGGGATATTTTAAGACCAGCGGTTCCTGTGACATGGACTGGAGAGCCACAGATTGTGGTGCACCCTGGTTCCCTCACTGTCAAGCATGGTGAGGAACTCAAGCTACAGTGCACTGCCTTTGGAATCCCTGCTCCACACTATCAGTGGTATAAGAATGGCATCCCAGTTCAGGGGGAGACTAAAGAATTATTGATGATCAAGAATGCAGATAAGGATCACAATGGAACATACCTCTGTTCCGTTTCAAATGTCCTGGAAGAGACATGGACCGAGCCAGCTGATGTTAATATAGTGTTTCCTGATAAAGCCACAGCAAAGAGATATTATGCGACTGACAAAGTGGCCATTCTGATTGGCAATCTGAATTACTCCAACCACCCCAACCTGATTGCACCCATGATCGATGTTCACGAGCTAGCGaacctgctgcagcagctgggaTTTAGGGTGGTGTCCCTGCTAGACCTCACCAAGCAGGAGATGTTGTCGGCCATTGATGCATTTCTACAGCTCCTGAACAGAGGAGTGTACGGTCATGGTTATGAATGTTCAGGACGAAACTATTTGGTTCCCATTGATGCACCCCAGCCCTATAGACGGGAGAACTGTCTTGGTGTGCAAAGAGTAATGCAGAGCATGCAGGAGAAGCACACTGCACTGAATGTGGTCTTGTTGGACACTTGCAGAAAATGgtATAACCAGGGGTGTGTTCCATCTGAGATCAGGTCACTGGCACCGTTGGGCAATACAGTATATGGATATGCCACGAGTGAAGATGCTGAGGCGTATGAGGTGCAGGATGGAGAGAGGAGCTCCGGCATCTTCACCAAGTACCTCAACAAACACATCTTGCTGCCGGAGAAAGTTACTCACGTTCTTGATCAGGTGCTGGAGGATCTAGGGAGAGACCCACTCATCACTGGGAGGCAGGTGATGGAGATCAAGCACACACTAAAGGACCCCCGGGCGCTGACCGACGACTTCTGCAATACAGGACACACAGTGGAGCTGCAGCTCAGAAACCTACGCTTGTTGAGCTTCGCCTGCGGGGTTGAGGTTGAGCTGAGCTTTTTTGCCTTGTTCTCCAATGTCATGATCATGTACGCCACGGTGAAGAGAACCCCCCCCACAGCCATGGACTGCAGTGTCAATCTGCGTAGCATTCCGGCAATGGACGATGTCTTCTCAAACAGTGCAAGCAGGTCGGATGCAGTGGATTCCTTGCTTATGAGCGGTCCTGATAAACCAGACTGCAGTTTAAGACTATGCGGCCTCCAGAAACTAAAGACGCCTCTGGTGATCAAGGTGGATTTGCATTATACGCACCCTGAAAAAATGCGACGCATCGTGGAAAGTGTGCAGGAGGTCATTGGAAAGCCTTTGGTGGCCAGATGTGAACTGCACCGgcagaggcaggcagagggCCCTGCGGGGCGAGAGGGCAGGGCAGCCGCCGCCGCCACTTTCCTGAGCGTGGAGCACAAGCAGCCCTGCAGAGCACCCTCCCGGCAGCCCCTGGGCCAGCCCTGCCGCCCCTCCACTCGCAAAGCGGAGAACGCCAGGGACCTTGTCTCCAAACGGCACTTGGCGAAGAGCAACGAGCCGGAGGAGAATGACGAGAACGAATTTTTACACTGTGGACACCCGACTCTGGGACAGAAGAGCAAATGCACCTTGTGATTTTAACACTTTCCCCAGCACATATCTGGGTACACTCGCCATTCCCCTGGGGCACCCTTGGGACTGGTCCGCTCATGACACTGGGAAATGGCACCGAAGCATCGCTCACAGTGTTTCTTGTGGATATCGTAGCGTTCGACGTCTtgggagattaaaaaaaatctaaaaactgtTAAACTATTGTTGGAAGTGTAGCCAAGGAAATCTGCATCACTTCTACTACTACATATGTACATGGCTTTTCAAACAGTATGTTCGAAAATGAAATGCTGTAACTGATCTATCTGTCATGTTTCAGATTTTCGTCACTGGTTAAATGGTCTGCTTTGATGGTATTTATAATTAGTTGCTTCACAAACTCAATAGGTTTTATGAGTGCTAAATGCAATACACATTTTTCAAGTTTTCCCCTCAATAGTATACATCCAACAGATTAACAGTGCTCGGAAAGTGTTACgaatcaatatatacaaacttgTATAGTTTAGAAAGTATACTGAAATATACTTTCATATGAGTAGTCAATATGTGACATTTTTTATGGTATGGATGTACTCCGCTTTGGATTCCATTCAAGTTTGTCctgaaggaaaaatacaattgttaatgtaaataaatttgCATTTGGTTATTACTTTAGTGTTTATGTTTTCAGATATGAATACATGACATACACTATAATGCTCCTATTAAAATCAGTTTAGCttgttgaatatatttattataatttggcAGACAAACTTTTCTGTTTAATCTGTTTCATTAATGTTTTGacaatttaataattgaatagATTTCATTGTACAACGGTATGTATTTGAGTTAACTTTACATCCTCATTTTTCAGAGGGCTTAAACtaatacatttctgtactttgatttattttatgcatgCAAAGTATTCCAGGAGTAATGTTGCTTTTCAGAACCCTTAAATAACTATGTCTGAAATcaagcataaaaaaatataataatgcagtTCATCATTTTAATGCGTTTTCAGACATGAGCTGTACTTAACGGTGGTTGCTTTGGACTCCTTTATATCTTCATTTgtgtatattcatattcatgtgTTGCAAATGCTAGGGTGTCACAATGTTGTGAGGAATGATAGAGGTGATTATATTACTAACCAAAACGCCTAGGATAACCAGTTCTCAttagtacatttgttttgtgggtgatatttatatatttctggtGCAATTCTCTTATTTTTgttcctattttttttattattgttaatatgttATCTGTATCTTTCCTTTGATCAAATAAGACTACATagaaatacagttcagtatCTACTCTGTATTCAAGGGTTTGTTGACAAGTGATTGTttctggaaacaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32768 lncRNA downstream 1051 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 184594 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 231802 29001049 ~ 29001957 (-) False AMCG00007768
TU32688 lncRNA downstream 335183 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 499310 28734112 ~ 28734449 (-) True G25987
TU32805 lncRNA upstream 54999 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 109005 29365624 ~ 29366245 (-) True G26165
TU32901 lncRNA upstream 351698 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 1148379 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA upstream 1175187 30431806 ~ 30437988 (-) True G26352
AMCG00007771 mRNA downstream 111446 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007770 mRNA downstream 133270 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007768 mRNA downstream 219812 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007759 mRNA downstream 273655 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007757 mRNA downstream 312636 28897966 ~ 28921123 (-) False AMCG00007757
AMCG00007779 mRNA upstream 32450 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007780 mRNA upstream 119627 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007778 mRNA upstream 122425 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007783 mRNA upstream 148769 29405388 ~ 29427475 (-) True AMCG00007783
AMCG00007782 mRNA upstream 172036 29428655 ~ 29437506 (-) True AMCG00007782
TU31949 other downstream 3602167 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 3968808 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 4965838 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5261094 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8761055 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5612816 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 7983470 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8238292 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8310998 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8314338 37570957 ~ 37571488 (-) True G27439

Expression Profile