RNA id: AMCG00007774


Basic Information

Item Value
RNA id AMCG00007774
length 7801
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00007774
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29258430 ~ 29288693 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTGCAGTGCCTCGCGCTGGAGCGGCAGGCTGAAGTAAAGGACAGAAAGACTGAAATAAATGACGCTGTCCGTATAAAGTGGGCACTAGTGTCAAACCGAACTGGATTTGTCAGAGAACTGACGGAGCGTCAAGAGCTGCAGCTGAAGTTGTGCGTTTGTCTCTTTGAACCGGAGTGTTTCACGGTGTGGATAACCTGCCACAGTGGACATGGGTTCCCGCAGGCCAATGACCCGCTCGTTCTCTGGGAACGGAAGGCTGTCCAGCAGCAGCTCCGGCAGCCAGAATGGGGAAGAGGCACCTGCACCAAGTGCGAGAGCCGACAGCCGCAACTACCTGCTCAACGTGAGGCCTGAAAACAGGACCACTTTCTGCAGTGTGATGGCTCATTTAACAGAGGAAACCCAGCCAACATTTGAGACTACCTTAAAATCCAAGGCTGTATCTCAGGACAGTAATGTTAAGTTCTCCTGTGTTGTTTCAGGTTACCCTGAGCCTGAACTCACCTGGTATAAAGATGACATGCAGATGGACCGATACTGTGGCCTTcccaaatatgaaatatttcgCAGTGGAAAAACTCACACTCTGCACATTTACAACTGCACTGAAGACGATGCAGCCATCTACCAAGCCTCCGCCAGAAACAGCAAAGGCATTGTATCCTGCTCGGGGGTCCTTGAAGTTGGTACCATGAGTGAATACAAAATTCACCAGAGGTGGTTCCACAAGCTCAAACAGAaggcagagattaaaaaaaaggagctggaggagagtCGCAAGAGGGGCAAAGGGAAAGTCAATGTGCAGGAGGGCATGGAGGGCATGGAGCAGCTGAGAACAGTGAGTCCCGACAGAGTTCAAAGGAAACGGAGGTCGCCTGGCGAAACCCACACAACATTGCCATCCTCtttggaggagagggaggacaAAGTGAAAATGCACATTCAGGATGGCGAGGCCAGGTTGTGGGACGGCACTGTGGATGTAAAGGAGCAGTCAGCTGCCGCTGCAGCAGATATGCCCAATGGTTTTATGGCGGGTTCCAAAGGAACAAACAACTCAGACTCCCCCAAAGAAAGTGCCTCAGAGAATGGTAACGAGTTCCTGACGTACATCTACGAAACGGTGGAAATAATCACCACCAGGCCTCCCAGCAAAGATTTCCTtgccaagaagaagaaaaagatctCCAACAGAATGGACGGAGTGGAGCACAGTGATGATGCAGGGCAGGGGGGTAGCAGTGACAACGATGTGAGTGAAGGAGGAATGAGTGTGGCGCAGTATTTATCGGAGTCCTTGAGGTCGCAGGCGCCCAAGGATACAGTGAAGTTCTCGCCCTCAGAGGAGTCGATGGATGTGGACACAGAAAGGGCTGAACAGGTTACAAGCAGGAGCAATGCTTCTGAAGTATCAGAAGATGCGGAGATGATGATACACAAGGAGCCGGAGCCCACGCTGGCCAgcccagtttatttttctttgaaggACATGTACTTTGGAGTCAAGAACGACAGTGTAGACGAAGCACTAGGAGTTCCAGAGATTCTGCATCCTGAAACAGGAAAACCTGAGGAAAATGTGCCTGTTGCACCCCTGTTAACAACCTCTGCCATCTCACTGGAAAACAATCTGAGAGAACCAGAGGACATGACAAAGGTTAATAAATCACCAAGTGGGGAAACAATACTGAGGGAAGTGGACAGCAAACTGTTGCTTCCCATGGACATTCCTTTAAATGCAAAATCACTGGTGGAAAATGCTATGGAGTCTCAAAACAGTTCTGCTGCTGAAGAAACCTTGAGAGTGGACACCTCAAATCAGGGAGTTACCTTTACAAATCCACAGTCCACAGCTCTGGAATTGGAGACGTCACTTAAAACCGAGGTCAGGTCATCTCAAAGTAAGAATGAACCAGACAATTTTCAGCTGTCTGCAGAGGAAGACATCAAATTTAAAGAGAAAGTACCGATGCAGGAGCAAGCAGCAACAGCCCTGCCTACTGAGGCTGCAGAAGGCCAGATGcaaacagaaaagacagaaGCCCGTGCTGGTAAGAAAATGGTCAACATCTCAACTGAACTTCTAGTACAAGAGCCACAGTTTATTTCTGGTGAAGAGATGCTAGACAACGTCAAAGCTGAGGCAAACAAATCCCTCATTTTGCACAATAGTGGAGAGTCTACACTTCGTCAATTGACGAAGAACACACAGTCCCATTCCATGGGGTCAAACGAGGGCCACACAGAGCCTGTGACTGAACCACACAAACCAAGTCTTGGAAGCACAGTAGATATAGACATCACTTCCAAATTTCTTAGCATTTCATCTATGGACAATCTAGGCAAACAGTTGCCAACTGACGAAACAGGGGAAATCATGAAAGATGTAGAGAAGGACGGAAATGTGAATGTTAGTGTTGTGCAAAGCAGAACAGGGGACATGAAAGCACAGGTCGTGTCCTGTCCCATAAAGGAAGACAATGCCAAGATGGAAGGAGAAGCAGCCGCAGGAATCAGAGATCAGGAAAATGAAGTCAAGTGCATTGATAAGCAGCCAGTTGAAGAGAAAGAGAGTCTCTCTGTTTCAGGGGTCCCTTTAGTGGCTGTGGAATTAAATGCTGCCAGTCTTCCTCAGATTGACGATGCAATAAAAGGTGTTGAGATTATAGAAGTCTTGGACTTGCAAATCACAGGTGTTTTGGAATCACCAACAATTGAAGCAGAAAACACATCAATTACTGAGCTGCCAAGCCTACTGATAGACATCAAACCTGTCTCACAGATTTCCACAATGGAAAGCAAAGTTAAAGAAATTCCAGAGGTTCCATTGGCCACTTTCCCAAATGAAGATGTCCCTGTCAAGGTCAAGATCCCAGAGCCAAAAGCTAGCATAGAGAGGGCAGAATTAGTTGAGAAAAAGATAGACAACCTGTTGGGTACAGACGTGGACAGCAGTTGTGTCCCCACCATAGAGTTACCCTCTGAAAATGACAATAGGATTCAAAAGCCTATCAAAATGGAGTCCACAGGTGAGAATTTAGAGCGCACTTCCATAATCACatctgctttcaaaacaaataggCTACCTGCTATTGTGGTTCCTCCAATTTCTATCACTTACGAGGATAACAATCCAGTAAATGACAAATTCTCACTCTCAGAAGAAGGCCTATCTGTTGTAAAAGAGTCTGAATCTTTAGCCAGTATCCTCCGGGGTGTCAAGAAGGACCTTGATTCTGGAAAAGATTTTGGTCTGTCCTCTATAGAAAGCAAGAAAGAGAATATCTCACCGCTGAATGACACTGAGACACTCCCATGTACCAAGGAAGGCTCCCATACTGCTGGGGTGAGCACAAAGGATAGCACTACAGATGATTCATTAGGAATCCCTGTGCTTCCGAAAAGTAACTCTTTTGAAGCACTGAACCTAAGTATTGCTGTTCCCTCCCCTGAAACAACAGCTCTAGGCACTGGCCCATCATTGCAGATTGGCAAACAGCAAGATGGCCTGAAATCTTCAATCGAGCCTCCATGTGTCAGGGAACAagagaaagacaagaaaatTACAGACTCTAACACTGAGTCGGTCTCCCAGCTTGGGAAACACTCAGAAGTCAAAGCTGAAACCGAAAAAAACTGTCCTCCTACAACAGAGACACCTCTCTTGAGTACTACAGCCCCCCGAAGGTTTGCCACAAAGGGTCCGCCAAGTCCAGAATCCCTGGGAGTGACTGGCGTTCCCGCAATCCGTGTCGACAGTTTCCTGTTTGAGGATAAGAACGTGGATGAGCACACAGGCAAAGACACTCCCCCGGCTGTGGCCTCTTGTGAAAGCAGCCCCAGACTGAAGCGCAGAGACAGCCTGACCCTCATCCCCTCTGCCACCCCAGAGGAGCTGGCCTCCGGGGCCAGACGTAAGATTTTCGTTCCAAAACCCAAACCGGAGGAGCCTGAAGGGTTGGTGGCTTTGGACCCTCAGTCAAAGAAGGAGGAAGTGCCCAAGAGAAGGAGACTCTCACAAGACCAGGAGGCTCCTCCTGTGTCTCCCGGACAGTCTAGGAGGTCATCCACTCTCTTGCAAGCGCCCAGTGGGCAGCAGACACCTCCTACTGAAAGACGCTCCCCAAACCTTAGCAGGAAAAAGTCCTCCCTTGAGGTACCCAAACTATATGAGGAAAGAGTTGACAACACAGAGCCTGAGGTTCAACCAGAAGAGAAAGTAAAGCAAGACCCCTTCAGAGCTCCTCAGGTCATCCGCAAAATCAGGGCAGAGCCTTTCTCAGATGCCGGTGGACACTTGAAGCTTTGGTGTCAATTCTTCAATGTGCTCAGTGATTCCACTATAAAGTGGTATAGAGACGAAGTTGAAATTTTGGAAATGAAAAGAAGCTCAGGAGACGAGAGTCAAGTAGCACTTGCCATTGTTCAGGTGACCAGCAGAGACTGCGGTGTGTATAGCTGCTCTATAGAGAACGAATACGGGACTGATTCCACAGACGTGTTACTCAGTGCAGAAGTGCTGTCCGGACTCCTTTTGCGAGAAGATTTAGAAGttgGAGAGGAAATTGAGATGACCCCCATGCTGTTTACTAAGGGTCTGGCAGACTCAGGATACTGGGGAGAGAAGTTCTTCGGGCGGATCATGACACAGGAAGTGCACATTGGGGAAGGGTGCACACATAAAGCCTGCAGGGTAAAGGTTATCTATGGACTGGATCCCATATTCGAGTCGGGCAGCACCTGCATCATTAAAGTCCGAAACCCCATTGCGTATGGGACCAAGCAGGAGAACCACCTTGTTGAGAGAAACCTGGAGATCACTAAACAGGAATGTAAGATACAGAACACTGCCCGTGAATACTGCAAAATCTTTGCTGCTGAGACAAGGGTGATTGAAAACTTTGGCCCGGCCCCAGAGATTATCCCCCTCCACCTGATCTACCGGCCTGCCAACACTATTCCCTACGCCACGGTGGAGACAGACCTGGGCAGCTGCTACATGAAGTACTGTATGAGAGACGAGGGGGGGCGTCTGCTCATGAGAAATGTGTCGGAGATTGAGCAGAAGTGCTGCGCCTTTCAGCACTGGATTCACCAGTGGACAAACGGAAACTTACTAGTAACCATTTTGGAAGGAGTTGGTCTGAAGATCACAAACGTTGGGGTTGCTACAAAATCAAAAGGGTATCAGGGGCTGGCAGACAGCTGTGTCCCCAGGGTGTTTGAGCAGTTCATCACCCACCATCAGTGCAACTACTACTGCGGCCTCCTGTCCCTGCGTCCCCTCAAGAGCATGGACACGCTGCAGCAGCACGGCAAGATGAAGGGCTCACGGAGTCCCCTGCTGAACCGCAAGGCTGCCCCTGGCTCCTCCAGCCCACAGATGCAGAAGAAGGGCATTGGCAGCCCTCAGACTATCAAGAAAGGCACATCCAGCCCAAAGGTGGCTAAAAAATCTGATTCAGGAGACAGCAAAACAACTGTCAaacacaaaactgtggaaattcCTAAATCGGTCAAGATGAGGTAAACCAAAGTATAGACTGTACCTGTGgagtgaaatgtattaattcttaCTAATTCTGATTACCTTCTCTCATGGAATTGCCTAGTCAGGACCCACCACGTTGTTCTTTACCCTGCCTCAGCTTCTAGTTTTGCCTGAGCTGTGAGCTGCTCCTGGTGACAGCAGCCAGACCCCTCCCCCTGCCAGAAAAAACTGATTTCTCTCACTCCTGCATTGATAGTTCAGATAAGGGAATCAAACTGAGGTTTTTACGAAGAAGCAATGGTCAGAAAATGTTGCAATGAGCATTTGGTTTTCAGGAGTCATACAAATGACTAATCCAAAAAcaatccacaaataaataagaattcaGGAGAGTACAGGAAATTTGGATCAGACAAAACAACGTCATGTAGAACTTGGAAAAGCTATTTTGCCTAATATaactcctttttgttttcttttggttgGCTCTCTAGTTACAAGCAGCAGTCACACTCATTTAAGTCACAGCAATTCTGTATGATTATATGTTGAATGCAACCTTTCAGaagtataattaataacatgcaGACAAACCTGTCAACTACTAGACAATGATGTTAACACAGCAAATTCACAAACTGGACTTCAGACCTTTACAAccaggaaaaaatatgaatgagaaGTGGACATGGTATTTTTAAACCACGGGAGCTTTCGGGCAGTTGCTGCTCAGACAGCTAATAAGTAGTAAATGCAGACCACAACATGACAAGCCTTGTGAGTATGTGTCCGAGATTGTGCCTCTGTAGGAGGGGATGAcacaaagtgttaaaaaaagctAAAGTTGTGAAATTGTGTGATTCATGTCTCCCAAAGTGTGAAGACAGGAAATCTTTCTATGTAATGTTATCCTGTGTCCACACACAGCTAGCAGTACAATTTACATTAGAGCTTTTTGAAGAATCTAAACATACATGGAGTTTACTGGCTCATCCAGTACCACAGGTTTGCGGACTCTACAACATCAAAGCTGCAatagaaacaatatttttgtgATATACTTAAGacagataaaaacataatgcatcATGGTATAACTGAAAAGGATGTCTTTTATCAAGGACATttgtttattacaaattatgttATTCCTTGGCACACTGGTTATGGGAAAAAGCCACCTTCCCTTTTGCTGTGGAgtgctctctgtgtctctttctcaGCAGTGCCATGTTTCTGAACTGGGCACCATGCTAGAATGTGGACTGCACACAATACCCAGCAAAAATGAATCAACCATTCCTGGGAGCATGTCAGGTGAGGTTAAATTGTTCTTGCCCTGATTCATTGTCATGTAGAGAAATGTTAAAGAACTGCTACGCCTACCTTTTTGTTTCTACTCACGAATGCTTTCGTTAATGTCATTCAGAGAGGATAGGTGTGGCTTTTTTTTGCTACCGTTGCTTGAGAGAAAAGCAGAAGTGTTAGtctttcaaaatcatgaatctACATTCAAAGCATTCAGCTGAGACATTTTGGCACAATTATTTCAGGCTTATACAGTATAATTCCTGTTCATTCATATATTGATGATGATTTGAATGACCAGggagtttgttgttttctgtttatttgtattttagatatgaattattttgaaaCCAAAGCTGCCATTTCTGTGGCTGTGGCATTTCCACACAGTGTGTCCCTCAGCATGTCCACTGAGAATAGTTCTGAGCTGTATTATATACCGGCTGCTTGGCTTACtttttctttctacaatggTGTTTTGAGGGTATTGCACGTGGCATTTGACACTTTGGCATTTGAAGAAAAATGGGTCAACATAACCACCAGGCTATGACACCAAAAGAATGTCAAACTTGGTGACAATTAAACTGATACAtttgcagcattttatttttgtgtgtgtgtatttgtgtgtgtgtgtgtgtgtgtgggggctgTGCTTAATATAGTCCATAACACTGTTATACAGTGTTCCCTGATGTTTTGCCTACTGTCTttgtaagtaaatatatatatttaaaatgtacatagcAACATGTCATAAAATGAATCTGTGTTTACAGAAATAACTCCCCTTAAatgcaacaaattaaaaaacgaaGTTAAAGCACTGCTTTTTTGTTCATATGTGTTTCTCTGTATTATGATAAGCATTGGAACTGTCATTTTAGTTTCTCTTACGTTACATACAAATGGTTTGGAATGGTAATAGTAAATGGCAACCACAGGTAAAACCCTGGacaaaggtgtctgctaagaaataaataataataat

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K08868 ALPK; alpha-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32753 lncRNA upstream 176049 29074456 ~ 29082381 (+) True G26103
TU32676 lncRNA upstream 357304 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 527029 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 558689 28682171 ~ 28699741 (+) True AMCG00007754
TU32560 lncRNA upstream 558689 28682171 ~ 28699741 (+) False AMCG00007754
TU32804 lncRNA downstream 22930 29311623 ~ 29311944 (+) True G26146
TU32833 lncRNA downstream 78680 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 85683 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 250990 29539683 ~ 29540062 (+) True G26196
TU32910 lncRNA downstream 423806 29712499 ~ 29724420 (+) True AMCG00007788
AMCG00007766 mRNA upstream 186974 29059031 ~ 29071456 (+) True AMCG00007766
AMCG00007764 mRNA upstream 202979 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007765 mRNA upstream 226223 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007769 mRNA upstream 252051 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007767 mRNA upstream 258345 28989713 ~ 29000085 (+) True AMCG00007767
AMCG00007775 mRNA downstream 32538 29321231 ~ 29336890 (+) True AMCG00007775
AMCG00007773 mRNA downstream 50953 29339646 ~ 29342580 (+) True AMCG00007773
AMCG00007776 mRNA downstream 62377 29351070 ~ 29351882 (+) True AMCG00007776
AMCG00007777 mRNA downstream 66358 29355051 ~ 29361487 (+) True AMCG00007777
AMCG00007781 mRNA downstream 104214 29392907 ~ 29402001 (+) True AMCG00007781
TU32711 other upstream 254657 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 803723 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1163689 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5063949 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6064909 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 477135 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6322423 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8856291 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8879877 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 9067236 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile