RNA id: AMCG00007775


Basic Information

Item Value
RNA id AMCG00007775
length 6198
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00007775
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29321231 ~ 29336890 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tagctgtgtgtgtgtatggctcGCCATACTCTCCCGAGGATGTCAGCGAGCTGTGCTAAGGGTCCTGATTGAAAGAACAGTAACTGAGCCTAATCTCTGAGTCTGAGAGACAGGAAGGACTGCGAAAGAGACAGAGGGGCGAAactagaaacaaaatacacattttaaagtgtagGAAATAAAAGAATACTCCATGGTTCCGTGAAGTATGAATTAATGTATACGCAACTGATGTTAATCCGATGCATCCAAGTAGAACAGAAAACTATAACTGTAGGGTATACATTAACCACGAAAACGATCGCAAAGGCCGAGACGGGGggaaagaaataatatatagcctgttaatatatatatataaagtgtatttacatgtataatCTCAAACGATTAACATTGTACTCCATTGTTAACTTGCCGCCGTGGTCGTTTAAACGTGCATCTTGGGGTATGCATTTGAAACGTACGAAGTGAGTCTTTGCAAAGTAGAACTACGATAATTAAGTTTTACGGTAGGAGTTCACAAACGAGACGATCGTGGGCTTTGCTGTTTACTTTAATACGACGTGCGTTGTTTATTTCAATAAGAGGGATTCAAATGAACCAGCGTTTTGTTTAGTTCGATCGGGGCCTTAAAAAAACTACTGAGTGTCGGTTCTGGAGAGGCGGGGAAGTAGCGAAGCTCGGTATAATGTGAATAGAAAGTCATAGTTTAAATGATTACAGTAACGATGGTGCAGTCTGTAATGTCACGGAACCGAAGTACTAAATAAGCGGCACATTGATTGTACTTTACTGCGATTTTGAGAGCAGCAGCCATGAGATCACATGACCCTGCTGAGTTGCCACGGTGAATAAACAGGATCCAAATGgtTTTTCTAGGTTTCCAAACATGGGTGACATGAAGACCCCAGATTTCGATGACCTTTTGGCCGCATTTGACATCCCTGATGCTACCAGCTTGGATGCCAAAGAGGCTATTCATACCAGCCATGATGAAGCTGAGGGTCACCAGAAACCTGCAGGGATGTGCCTGGAAGAGAATGTCTCCATCCACCACGTGCTGCCAGCCCCTGACCTCCCTGCAGTCAGCGTGATTGTCAAGAACACCAGCCGCCAGGAGTCCTTTGAGTCAGGCGTGGAGAAGGATGCTTGTCACCTTGGCCACAGCCTGTTGCACAATGGATTCCGGAGTTCGGGGGCCACCCTGGATTCTCACCACATGAGCCCAAGCAGCTATGGGAAGTTCGAGCCATCATTCCTCAATGGGGATAGCTCGAGAAGCTTCCTGGACAAAGTGGAAGCCCGCAAAACTGAACGTGTGACATCCTTCTCTCAGTTCAGTCCTATCTCAAGCCCAGAACCGGAGGACTCCCAGGATAACGGGATCGATGATAGACCGAAACAGGAGGAAAGACCCTACTTCCCTGCTGCATCTGTGTTCGTGTCTGCGGAGCGCTCCATGTTGGAAAATCTGAGAGGGCTTCCAGAGTACAGCATGTTTGACCAGTGCTCCAAAAGAGAACCTGTGAATGATGCTGGAAACGGCAGAGAAAAAGACACAGAGTTTTGCAGAGTAGAAGAGATTAGGGTACAGGAAAAAGGGGAAATGACTGTCGAAGACCATGCCAAGAAGACTAGTTTTCTTGGCAAACCCATGCTCCCCTTGGATGACCTTCACAACAATAATCTTGGCGAGCCAAAGAATTCCTTTGTTGCAGAAACTTGCTTGGGTTCATCTGTTCCACCTCGTCAGCGTATCAAATCGGCCAACTCCAAGCTGTCCTCTTGCCTTGCGGCGTTGGCAGCTCTGAATGCCAAAAAGGTTGCAGAGGTTCCAAAAGAAGTGCAGCCTCTTATATCCAGAGAGCCGCTAGCGGCTGTTAAAGAAACAGTAAAGGTTAGTTCCAAAGTGCCCAAGTCTCCAAAGAGCCCAAGGAGCCCACTGGAAGTAGTAAAACGGTTCAATAAGCAGCCAGATAGCCCAATGAGCGTCTGCAGCGATAGTAGTGGGAAAGCATCTCCTTCCCTGACTGCAGGTTCTCCCCCTGCGATCCCGAGAGTCCGAATAAAGACCATCAAAACCTCCTCTGGGCAAATTAAGCGAACTGTCACAAGCGTGTTGCCCGATTctgagctggaggagctgcaaTCTCCACCTGAGATGTCACCCTCCCAGTACGTGGCAGTCGACGAGTCATTGTCCAAGCCTGCATCATTCACACCACCTTCAAATAATGTGATTGACAATGTTGTCTTCGAAAACGGAAGGAATAAACCCTCCCACAAAAATACGTCCACGGTGCCGTCGCCTGGTGTGGCTTCGAAGCTGGCGTGTATGAAACCGGGCAGGATCGTGAACAGGACTGCCACAGTACCTCCTTCAGCAGCCTTTCACAATGCAAGCAGTGCCATCATGAGGGTGGTTAATGTAGTCCACCAAAAACAGCAGAAATCTTCGCCATCGGCCAATACCAACCTGCTCCCCAAAGCTGTCCACCTGGCCAATTTAAACCTGGTTCCTCACAGCGTGGCTGCCTCTGTCACAGCGAGATCCGCCACTCAGCATCAGAGCCAGTCCCGGCTGGCTGCTCCAATGGTGTGCAGCACAGTCCCTCTGGTGCACCAGGTCAAAAAAGCGGCCCCTCTTCCAACCTCTTCAATCCCCAGTGCAGCTGTAGGGGCCTTAAACCGACTCTTAAATGCTGCCAACCCTGTGCCATCGTATGTGCCCAACCTGCACCCTCCGCCAGAGAGCAACATCCGCTTGCCTGCCCGTGGCTATCGCTGCTTGGAGTGCGGGGACTCCTTTGGGCTGGAGAAGAGTCTACAGCACCACTACAGCAGGAGGAGTGTGCACATCGAGGTGGCCTGCACCCACTGCGCCAGGACGTTGCTCTTCTTCAACAAGTGCAGCTTACTTGCACATGCCAGGGAGCACAAGAGCAAAGGCATTGTGATGCAGTGTACCCAGCTCTTCATGAAGCCCATCTCTGCGGACCAGATGTTCGTGTCCACACACAACTCTTCAGGGCCTCCGACCACTCAGAGTGCCCAGCTGCCCTCTAGCTCTGTAGACCATGCAAGTAATGCCAAGGGCCAAGCAGTCATGCCTTTGTACCCAGACAAAGTCATTCGACACGGACTGAAATGTCTGGATTGTAGCAGGCAGTTACGGGATTACCCCTCCCTTGCAAGTCATTACCAGAGGTGTTCGGAGGAAACCGAGGGATTGACATGCCAAGTGTGCATGATGATGCTGCCTAATAAGTGCAGCTTCAAGGCTCATCAGCGAATCCACGCCCACAAGTCGCCTTACTGCTGCCCCGAGTGTGGGGCTGTGAGCCACTCCACTGACTTTCAGAAGCACGTAAAGGAGAACTGCCTTCACTATGCACGCAAGGTTGGCTACAAgTGTCTTCACTGCGATGTGgttttcatgtcattttatGTACAAAAGACTCATATTGAGGAAAAACACTGTGAAGTGTTTTTTAAGTGCTCCGTCTGTCCCATGGCCTTCAAATCTCCCGACAGCAGTGTTGTGCACATTAAGAGCAAACACCAGGCCGAAAAAGCCTCTCCACAGTACTGCACAGATGAAAAGGTTACATTTACCAAACATTTCATGCTGAAGAACCACATCAGTCTGATGCATGGCATTAAAAACCCCGACTTCAGCCAGATGGCAAAAATAGCCCCTTCAGAGAACAGCAGTAAAAGTTCTACACAGGTGCCAGTGGCGAAAAGGTCAGCAGAGGACGCCCTTGCGGGAGGAGGGGAGAACGCTGTCCCTGAGGCCTCCCCTGCAAAGAGACTCAGACCGCAGTTCAGGTGCTCCAAGTGTGGCTTCTCCACGGAGGACAGCACGCAGTTCCAGGAGCACATTCCCCAGCACAAGACTGATGACGGCACGTTCCAGTGCCTGCGCTGCGGCCTGTGCTTCACCTCCCAGCTCTCGCTCAGCAGACACCTCTTTATCGTCCACAAGGTGAAGGAGCCGGACGAAGAAAAGGAGGTCGACGCAGAGGAGCAGGAGACAGACGAGGGCGAGCAAGAGGAAAGAGCAGAGCTGGGTGATAAAGAGACGGGAGATCCGGTGGCAGCCGTAGGGCCGATTAACACTAACTCAGCAGAGGAATCGTCAGGGCTGCAGTGTAACATCTGCAGCAAAGCCTTCGAGAATGAGCCGGAGTACGTCGCTCACGTGCGGACTCACGGGATGTCCTTCCTGAAGGCCAAGCAGAACGTAGGACCTGAACAATgaggaagataaaaaaaatatatattataaaaaaataaaatcataaaagctGCTAATTTTGCCCATTTAATGGGTAGACAAGGAACCtgtacattttgatgtatctgaGCAGCTTTGAAATGTGGTACTTCAATTTAATTCCCTTTGccatcaatttacattttttaaatttgcgTTCCTAAACTCTGAACAGGATGCAGCATGTCTCTGATTTACATCACTTTGACGTAATCTAGGAGAATTCCAGGTACCAACAATTTGAAACTTCAATGAGTTTAACCAATATAAAGGAAAGAATTAATCATATGTCTGCTtaataacatatatttatatagatacatatatatacacacacataaattgCTATATTATATAAGTTGACTGAAAagattgcatttgctttttatatatgcCCTATTTTATGGACTTTTCACGTTTTCCATTTAGTGTCAAGCACATTTGTTGTGGAACTCCATTCAACAAAAACGTGTggtgctttatatatatatttttcgtCTAAAAGGAACATGGACTCAAGTCATTTCTCTGTCCTTTTAGTCTTATGTGGAGTTCTTTGACAGTAAGAGCAGTAACAACACTCGTTTcagataaaatattaaaaatatatattttttattttttatttgacagtaTCATAATTTGGGTTTTCATACATCcccaaatttaaaacatttatgccTCACTAGCTAGATGTCatcaaatgaaatacatttgaatgtccATTCCATGCCAAATAAGCAAACAACACTCTGACATACCTTTTCTTTATTCAATGAGCCATTCTTATAACCAAAGTAGCACTTTCCTTGCAGGGTCATTGTATGTGGATTACAGGGGAGAACCCTCTTCTGTAATGAACATGTGTGTTACTTTTACATCAGAATGACAGCGGTTACTCTGAAATCTCTGTCCATGTGTTAAAACCTACAGTATCTTCTTCCAAATGCAACTTTGAATTATAAATGCAAGGCAAATTAATGAGAATGTTTTGAGCACAGTTACCATCCTAGCTTTCCTACAGATGGTCACCCAGATGTTAGGtcctattaaaaacaataatgtccCTAACTGTATTTGGTTGTCTTGCTCTAAGAAACAATTGCATTCATTAATAAAGTCTTTTGTGCATTGGGGGGTGGAATCTAATCAGGTACATCCAAAAACAGATTGTTGacttgacattttaaagaaagcaaattaTGCAgacttaagaaaacaaaagaggGGATTTCCATTCCTGTTAGTAAGGTAGATACACCTTTAAGGTATGATTGATGTTTGAATGCAGGAGAATGTGTATAATTGCTTGGTGAGTTTGTCATTTCTACCTTTACGAAGTGTTCTGGGTTGACTGTTGGATATGAGGTATTTTTGGGAGGTCAtttgactgtactgtattattgcatttaaatgaaaaaaaaaaaatctttaaatatctTATCTCCCATATTAATCAATTTTATAAATTACTTTggagatttatatttatagtcaTATTGACTTTTTTTCATGTGAACTTTCTATTTAAGTGCTGTACTACCTTGTGCATTTCTTTCCATATGTGTttataaagttttgttttgttctgttagTTTCTTTTTCCTTAAAACCAAGATCCTCTTTACTGTTTACTGAAGAGTggctaatttaaaatatttatcttaatgAACTGAGATTATGCTCTTTCCAATTCCAGTGTTTTTGATACAGCCTATACAGAGAAACATTTGTACTTTTTGATAATGTGTACAGTAGCATAGAGGACCTTGTACAAGATAGTCTGTGTAGATAGCGAGTAGATTCACATGTCTATCAGGGATTTCTCCCAAGCCATCACATATCTATTTAACCTGCGTTGGCCTCTGTGCCTTGCTGTTATGTTTacctgcaaataaaatacatatgtcagtaaa

Function

GO: NA

KEGG:

id description
K19325 ZNF592; zinc finger protein 592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32804 lncRNA upstream 9287 29311623 ~ 29311944 (+) True G26146
TU32753 lncRNA upstream 238850 29074456 ~ 29082381 (+) True G26103
TU32676 lncRNA upstream 420105 28900058 ~ 28901126 (+) False AMCG00007763
TU32611 lncRNA upstream 589830 28731130 ~ 28731401 (+) True G25984
TU32559 lncRNA upstream 621490 28682171 ~ 28699741 (+) True AMCG00007754
TU32833 lncRNA downstream 30483 29367373 ~ 29367723 (+) True G26167
TU32837 lncRNA downstream 37486 29374376 ~ 29375878 (+) True G26171
TU32864 lncRNA downstream 202793 29539683 ~ 29540062 (+) True G26196
TU32910 lncRNA downstream 375609 29712499 ~ 29724420 (+) True AMCG00007788
TU32916 lncRNA downstream 389504 29726394 ~ 29729537 (+) True G26243
AMCG00007774 mRNA upstream 32538 29258430 ~ 29288693 (+) True AMCG00007774
AMCG00007766 mRNA upstream 249775 29059031 ~ 29071456 (+) True AMCG00007766
AMCG00007764 mRNA upstream 265780 29032754 ~ 29055451 (+) True AMCG00007764
AMCG00007765 mRNA upstream 289024 29024785 ~ 29032207 (+) True AMCG00007765
AMCG00007769 mRNA upstream 314852 29003284 ~ 29006379 (+) False AMCG00007769
AMCG00007773 mRNA downstream 2756 29339646 ~ 29342580 (+) True AMCG00007773
AMCG00007776 mRNA downstream 14180 29351070 ~ 29351882 (+) True AMCG00007776
AMCG00007777 mRNA downstream 18161 29355051 ~ 29361487 (+) True AMCG00007777
AMCG00007781 mRNA downstream 56017 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007785 mRNA downstream 96122 29433012 ~ 29437033 (+) True AMCG00007785
TU32711 other upstream 317458 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 866524 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1226490 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5126750 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6127710 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 428938 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6274226 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8808094 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8831680 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 9019039 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile