RNA id: AMCG00007779


Basic Information

Item Value
RNA id AMCG00007779
length 2238
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00007779
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29289069 ~ 29296557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAAgCTATGTCACGTATTTTGTTGCTGCCTGTGTGTTGGACTTTCATCGTGCCCTCGCCTTGGTGGTGCTCACAAGCgtggttgtgttttttgcacTCTACGGCCTACTGAAGAAATACCAGGGGAAGAGAATATACGACTGCTTCGAGCCCACCAGAAGATGTTTCAAGGCCAACCTGAGATGGATAAAATGGGTTTTCATCCTGATGGTTGTGGGTTTGCTGGTGGCCTGGATCGCGGTGGACACATCTAAACGGCCAGAGCAGCTGATTTCCTTTGGGGGGGTCTGCATGTTTGTAATCTTGCTGTTCATCTTCTCCAAACACCGGCGAGCGGTGTCATGGAGGGCAGTGTTCTGGGGCCTGGGGATAGAGTTTGTTCTTGGCCTGTTCATCATAAGGACCAATCCAGGCTTTGTTGCCTTCAATTGGCTTGGAACTCAAATACAGATATTTCTGAACTACACAACTGCTGGATCAGGGTTTGTCTTTGGAAAGAATCTCATACAAGAAGCCTTTGCCTTTCAGGCTTTGCCTATTGTGATCTTCTTCAGCTGTGTGATGTCTGTGCTCTACTACCTCGGATTTATGCAGTGGCTGATTATAAAGATTGCGTGGATCATGCAGATATCAATGGGAACCTCAGCCACAGAATCCTTAAGCGTGGCAGGCAACATATTTGTGGGACAGACTGAGGCTCCCCTGTTGATCCGCCCATATTTACCAGAAATGACCAAATCTGAAATCCACGCAGTCATGACAGGAGGCTTCGCTACCATAGCTGGCAGTGTGATGGGAGCATACATTATGTTTGGGATTGATGCATCCTCCCTGATCGCAGCATCGGTGATGGCTGCCCCCTGTGCTCTGGCCCTCGCCAAACTGTCCTATCCTGAAACCGAAGAGACCAAGTTCAAGGATGAGAAAGAGATCAAAATAGATAGTGGAAACGAGACAAATATTCTGGAGGCCGCCAGCAGCGGGGCTTCAGCCTCCATCTGCCTGGTGGCCAACATTGCTGCCAACCTGATCGCTTTCCTGGCCCTCTTGGAGTTCCTGAACGCAGCCCTGAGGTGGTTCGGAGGGATGGTTGATTACCCGGACCTCACGTTCCAGCTCATATGCTCATACCTTTTCATGCCAGTGGCGTTTATGATGGGCATGTCCACAGACGAAGCTTTTGTCGCCGCAGAGCTCATAGGCACTAAGATCTTCCTGAATGAATTTTTAGCCTATGAAAAACTGGCTCAGCTCAAGAAGAACAGGCTTAATGGCTTGGATGAATTTATCAATGGTGAAAAGCAGTGGATTTCTGTCAGAGCAGAAACCATTTGTACATATGCACTGTGTGGATTTGCTAACTTCAGCTCCCTGGGAATCGTGATTGGAGGGCTGTCCTCCATATCCCCTTCCCGAAGGAGTGACGTAGCTGACTCTGTGTTGAGGGCTCTGTTCACAGGCACTTGTGTGTCTCTGGTTAATGCCTGTGTGGCTGGGATTTTGTTTGTCCCACAGAAAGACTGTGTCCACTTTCTTCAAACCTCCCTCTTCAACAGCACTAGCAATGAGCTCAGTTCCTGCTGTACTGAACTCTATGAAAGCACTTCTTGGGACAGCGGGACTGTTGTATTTGAGGGAATTTGGTCTGGAGTGAAGAATGCCACCATCAGCTTTAACATCTGCTGTGGTCTCTTTAACAACACTGTATGTCATGGCTTGTAATCAGTCCACTAAACAACGCCTAGACAGGagagttttatattatttgcacAGTTTTGGAAAGATTTTATGATTGTATCTCGGAAGTCATATTATAGATGTGTGGAACTCTGTATTGTGTAAACTTCCTGACCTTCCCCCTCCCTTAGATTGTATATAATGTTGCATACAGTGTGTCAGCTACTAAATAAGGAActgtaatattttttgtcagctaatattttaaatctactgttaaaatgtttttgtatttaatccagTTAATACTGGATtaactaaatactaaatacttaattaaatacTTCAACCACACATTTTTCTACTTTTCATAAGCATGTTCTCTAAAACCTTTTAATATCAGCTACCACCAACTGACCTTTTGAATGACTGACACTTTACTTAAAGCCCAGTTTATTATAGTTAGATatgaatgaaatgtttttaaacctaAACCCTGCtaacttaaataattaaatgtttacattaagcaataaatacattgaataaagaaaggaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32768 lncRNA downstream 56361 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 239904 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 287112 29001049 ~ 29001957 (-) False AMCG00007768
TU32688 lncRNA downstream 390493 28894693 ~ 28898576 (-) True AMCG00007757
TU32614 lncRNA downstream 554620 28734112 ~ 28734449 (-) True G25987
TU32805 lncRNA upstream 15061 29311618 ~ 29311943 (-) True G26147
TU32831 lncRNA upstream 69067 29365624 ~ 29366245 (-) True G26165
TU32901 lncRNA upstream 311760 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 1108441 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA upstream 1135249 30431806 ~ 30437988 (-) True G26352
AMCG00007772 mRNA downstream 32450 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007771 mRNA downstream 166756 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007770 mRNA downstream 188580 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007768 mRNA downstream 275122 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007759 mRNA downstream 328965 28951619 ~ 28960104 (-) True AMCG00007759
AMCG00007780 mRNA upstream 79689 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007778 mRNA upstream 82487 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007783 mRNA upstream 108831 29405388 ~ 29427475 (-) True AMCG00007783
AMCG00007782 mRNA upstream 132098 29428655 ~ 29437506 (-) True AMCG00007782
AMCG00007786 mRNA upstream 277777 29574334 ~ 29585227 (-) True AMCG00007786
TU31949 other downstream 3657477 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 4024118 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 5021148 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5316404 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8816365 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5572878 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 7943532 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8198354 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8271060 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8274400 37570957 ~ 37571488 (-) True G27439

Expression Profile