RNA id: AMCG00007780


Basic Information

Item Value
RNA id AMCG00007780
length 834
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00007780
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29376246 ~ 29377079 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCTGAATTTTCTGCGCACCAAGAGCTCCTCCGACGTGCTGCTGCAGCCCACATGGGACCACATCCGGCTGCATCACCACTCCACTGTGTCGTCGCCCTTCTTCCCCGTGCTCATCGCCTTCTGCAGTTACTTGTCTTTCAGCCTCCCCTTTGCCATCATAGACCTCTTGGGGGAGAAGCTGCCCTTCTTCTACCGATACAAGATCCAGAAGGAAAGGCAGCCCACTGTGGGGTTAATGGCCACATGCTTGTGCCAGGTGGTGTACAAATACGTGGTGTTCGTGATCCCCGCCGTGGTCGTCAACAGCTTCGTGATGCCCTCATCCCCTCTGCACACCCGGGCGCCCTCTGTCCTGGAGCTGGCCACTGGGGTCCTGGGCTGCTTGCTACTGTTCGATTTCCAGTACTACCTGTGGCACCTGGTCCACCACAAGAACCGCTACCTGTACCGGAGCGTGCATTCCTACCACCACAGCTACACCGCCCCTTTCTCCTGGACCACGCAGCACCTCAGTGTGGTTGAGATGATGACCGTGGGCTTCTGGATCCAGACCAACCCTCTCCTGCTGGCCTGCCACCCCCTGACGGGTTGGACCTGCATAATCATCGGCACCTGGATGTCAGTGGAAGGCCATGTCGGCTACGAAATGCCCTGGGCTCTCAACAACATCATCCCCCTGGGCCTCTACGGGGGCACCCCAGCCCACGATATGCATCATCAGAAGCCTCATAGTAACTTTGCCCCCTTCTTCAGCCACTGGGACAAGATCTGCGGGACCGCCATCTCCGTGGACAGAGACACAAGACTCGTGCAAAAGGGGAACTTTTGA

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32831 lncRNA downstream 10001 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 64303 29311618 ~ 29311943 (-) True G26147
TU32768 lncRNA downstream 143538 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 327081 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 374289 29001049 ~ 29001957 (-) False AMCG00007768
TU32901 lncRNA upstream 231238 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 1027919 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA upstream 1054727 30431806 ~ 30437988 (-) True G26352
TU33076 lncRNA upstream 1233139 30610218 ~ 30611693 (-) True G26370
TU33115 lncRNA upstream 1423332 30800411 ~ 30875378 (-) True G26403
AMCG00007779 mRNA downstream 79689 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007772 mRNA downstream 119627 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007771 mRNA downstream 253933 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007770 mRNA downstream 275757 29080151 ~ 29100489 (-) True AMCG00007770
AMCG00007768 mRNA downstream 362299 29001407 ~ 29013947 (-) True AMCG00007768
AMCG00007778 mRNA upstream 1965 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007783 mRNA upstream 28309 29405388 ~ 29427475 (-) True AMCG00007783
AMCG00007782 mRNA upstream 51576 29428655 ~ 29437506 (-) True AMCG00007782
AMCG00007786 mRNA upstream 197255 29574334 ~ 29585227 (-) True AMCG00007786
AMCG00007789 mRNA upstream 240192 29617271 ~ 29640100 (-) True AMCG00007789
TU31949 other downstream 3744654 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 4111295 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 5108325 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5403581 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8903542 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5492356 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 7863010 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8117832 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8190538 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8193878 37570957 ~ 37571488 (-) True G27439

Expression Profile