RNA id: AMCG00007782


Basic Information

Item Value
RNA id AMCG00007782
length 1388
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00007782
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29428655 ~ 29437506 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGGTGCTTGGTACTCAGCCGGCACGGAGACCTTTACCCTGCGCTGCTCCCGGAGAATAAGCACGGCTGGGGCGCTCGGTGCTCTGCTGAGCTGGCAGCTATTCCAGGGCCTCTGCTGTCACCCTCACAGCACAAGGGCTGTGCATTCCTCTCCCTCAgtcgcagcagcagcagcgagagagagatgagtATTATCTCCACCCAGTCAGGGCCTGCGAATAAGAAGGCCCTTTCCACAAGCTGTTTGGGGAAGATGCACGTCACCCTGATATGGGCCTTGTTTGCCCTGTGTCCCGTCTCCACTGAACAGGATTTGAATGACCACCATGTTGACGGCAAGCACAATCCAGAGCATGACGCCAACATCTTGCTTGGAAGGAAGgACCCAGATGAGGTTGGAGAGCTTAGTCCTGCTGAACAGAAAAGAAGACTGGCAGTGATTGTGAAGAAGATCGACAGCAATTCAGATGGCTTTCTCACTGAAGgtGAAATCATTTTATGGATAAAACAAGTTTACAAGGGATATGCTTTGGAAGACGTGAAGGAAAGGTTGCCAGAGCTTGATAAGGACGGTGACGGTGCGGTGTCCTGGGATGagtataatgtgtttttacacGGACACGTCATCGAAGTAGATGAGAATACAGTGCGGGAAGATCCGGAAGAAGAATCTATTAGAATTCTACATTTGAAGTATAAGAAACGCTTCAATCATGCCGACGCGGATGGGAACTCTGGCCTGAACCTTACAGAACTACTAGCATTCTTGCATCCGTCAGAAGTCGATCACATGGCAGATTATGCTATTGAGGATATAAGGAAAGACTTCGACCAGGATAATGACGGGTTCATCAGTCTCAATGAATTTCTTGGAGATGTCCGAAGTCCGGATGGTGAGAATAGAACGCAATGGGAGATCTACGAAACTGTTCGCTTCAAGAGCCTTTACGACATGGATGGAGATGGCAAACTTAATAACGATGAGCAGCTTCTCTGGgccTTTCAGCTGATCAAGGAAATGGACAGCAATGGTGATGGGAAGCTGTCCGAAGCCGAGATTATGGCCAATCAGCAGATATTTGTGCAAAGTGAAGTGACTGACTATGGCAGACAACTCCATTCAATACACGATGAactttaacttttgtttttgttttccctgttctaagtgtctatTTTTGGCTTGAGAAAATTGAACCATTgtctggatttttattttttttaattaaaccccAGACCTGGAGTGGTTATGAAATGGGAAGTTGAGGACAAAAATGTCTAATCATTCAATCGCACCTGTTTCAAAACTGGTGGTATGCCAGTTTGTCAAATAAAATtgtttggggaaaacaaaatgtgattaggctggttttcattaaaaggctg

Function

GO: NA

KEGG:

id description
K23899 RCN2; reticulocalbin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32831 lncRNA downstream 62410 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 116712 29311618 ~ 29311943 (-) True G26147
TU32768 lncRNA downstream 195947 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 379490 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 426698 29001049 ~ 29001957 (-) False AMCG00007768
TU32901 lncRNA upstream 170811 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 967492 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA upstream 994300 30431806 ~ 30437988 (-) True G26352
TU33076 lncRNA upstream 1172712 30610218 ~ 30611693 (-) True G26370
TU33115 lncRNA upstream 1362905 30800411 ~ 30875378 (-) True G26403
AMCG00007783 mRNA downstream 1180 29405388 ~ 29427475 (-) True AMCG00007783
AMCG00007778 mRNA downstream 42350 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007780 mRNA downstream 51576 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007779 mRNA downstream 132098 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007772 mRNA downstream 172036 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007786 mRNA upstream 136828 29574334 ~ 29585227 (-) True AMCG00007786
AMCG00007789 mRNA upstream 179765 29617271 ~ 29640100 (-) True AMCG00007789
AMCG00007794 mRNA upstream 238411 29675917 ~ 29683071 (-) True AMCG00007794
AMCG00007791 mRNA upstream 291376 29728882 ~ 29735699 (-) True AMCG00007791
AMCG00007790 mRNA upstream 301232 29738738 ~ 29750579 (-) True AMCG00007790
TU31949 other downstream 3797063 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 4163704 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 5160734 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5455990 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8955951 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5431929 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 7802583 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8057405 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8130111 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8133451 37570957 ~ 37571488 (-) True G27439

Expression Profile