RNA id: AMCG00007783


Basic Information

Item Value
RNA id AMCG00007783
length 2454
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00007783
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29405388 ~ 29427475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgaaactgtgtgtgcttgtgtgtgatttgtgtcaAGAAGCCACTTTAACTTCTCTGTATGAATCTTTTGGCctataaatagattttttgtatatatttaattattattttttggtttgttttagtttgtttgggTTGTCTTTGTGTTGCATACTTTTTCAAGAGTCGTGAACATCTGATTGAAGCAGGATTTACTATAGCCAGGATGACAGAACTACAATTTAAAGATGCCTTTTGGGGCACAGATTTCACCAACCACGTCGGCTACGAGATTCTCATACAGAGGCTGTGCGAGGGCCGGCGGATGTGCAAAGATGTGGAAGATCTGCTGAAACTGAGGGCCCAAGCAGAAGAGAGATACGGAAAAGAGTTGGTGACTATTGCTCGGAAGGCCGGGGGACAAACTGAGATAAATACTTTGAGAGATTCATTTGACCAACTCAAAACACAAATCGAAAACATTGGGAATCTGCACATGCATATGGCAGGCATGCTGAGGGAGGAGATGAAAAGAGTGGAGCAGTtcagagagaggcagaaagaACAAAGGAAGAAGTTTGAAGGAATTATGGAAAAGATCCAGAAGAATAAGGTGTCCTTATACAAGAAGACCATGGAGTCTAAGAAGATGTATGAGCAGAAGTGTAAGGAGGCCGACGAAGCAGAACAAGCACTTGAACGGATTAGCAACACGGCCACCGCCACCCCAAAGCAGACAGAAAAGGTGCAGAACAAGGCAAAGCAGTGCAGGGACGCTGCAAATGAAGCAGAGAAGCAATACATATCTAATGTTGAACAGCTGGACAAGACACGACAAGACTGGGAGAACACTCATGTGAGCACTTGTGAGATATTCCAGCAGCAGGAATGTGACCGGATCAATGTCCTGAGAAATGCACTGTGGGTTCACTGTAACCACTTCTCCATGCAGTGTGTGAAGGACGATGAGCTTTATGAGGAGGTGCGGAAGAGCCTGGAAACGTGTGACATCGCTGCAGACATCGACTGCTTCattcagaagaaaaagacaGCAATGAGTCCAGCAGCTCCGGTTGTCTTCGAGAGTTACTATGACAGGGAAGGCTCGGCTGACAGCAATGGAAGTGCCCGCTTCGGAGGAGGGGGTGTGATGAAGAGGTTTTCAAATCTACTGCAAGGGAACTGCAGCAGCTCGAGGGTGAATGTCAACGACTGTTCACAGCCTGCAGCATCCCCAAGTGCTGACAAGTCGGACGGAGTGTATGCATCCATACCTGGGTTTGAGAGTGGAGCTCTGGCAAGTGCCCCGTCTGAGCCTGTGGCGAGTGCCCCCCCAGAGCCTGTGAGCTACAAcgtaatatatgaatacattgcTCAGAACCATGACGAGCTGTCCATCTCCGTGGGGGACGTGGTGACGGTGATCGAGATAGGGGATGACGGCTGGTGGACAGTGGAGAGAAATGGACAGGCGGGGCTCGTCCCAGGATCTTACTTGGAGAGTGCCTGAGAAACCTGCAACCACCTTTCCACAGAGAGGAACAAAGGAACTATGGGAGTCGTTTTAAAGCAGCGGCACACAATCTACATTTGTGAACCCGGCCCTGGAAGGCCAAGCTCCTAATTTACATCTGAACTTTCTCCTACCTCGGGACCACAGAGTTTTATTTCCTGAAAGATGTGTTCAACTGCTATCTTAGCAGGAGCTTGATTGTGTGATACAACCAGGGTCATGATTTCACAAGTACAGCACATTTCTTAATAGTGACTTCCAATGTTAAAGCACTAAATCGGATACCCAATACACCATTCCGTCTCCCCAAGTCAATAGAAgtgattttaattgtgttgattaaaacaaatggctGTTAAGAGCATGGGTCACCTCAGAGCCCAGATTATGAAAGGTTGTGTTGAATGTAGGCCACAGAGCCTGGAGCGTCCACAGGTACAAAGCCAACTATTTTGACCCTTTATGTGCAAATCGTAATCATAAGTAACCATGAAATAGCCAGCAGTCTAAATAAAGACCCAATTATCAGAATGCCTTCTGAGTTCTCTGAAATTCAGGTTCAACTATATTTTTAACTATTAGGTTGCTAAATCCTGAGTTTTATAGCTGAGGAGAAAGGAAGTAtttttggggtgtgtgtgtatggcacAGTGCCTGCTGTAGACCCATGTGATTGAGTTTCTTGCAAATCTGATTGGCTGACTAAGCCCAGTACCAATAGATTTCAGATAGCATGAAGATATCAAATTAAAAGATCCTTTACCCACTGTTTTATACcccatgaataaataaagagccCAAGTGTAGGATAGCTTGTGAATATATATCTTACAGCTAATCCGCTTACTTACCCTTTTCTCACCTCTGTCTTTAAAGTgaaaattgtgtatatatatatttgggcaGTAGTTTACAACAACCAAACCCaagtggtttatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K12804 PSTPIP1; proline-serine-threonine phosphatase interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32831 lncRNA downstream 39143 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 93445 29311618 ~ 29311943 (-) True G26147
TU32768 lncRNA downstream 172680 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 356223 29031410 ~ 29049165 (-) True G26092
TU32710 lncRNA downstream 403431 29001049 ~ 29001957 (-) False AMCG00007768
TU32901 lncRNA upstream 180842 29608317 ~ 29608596 (-) True G26231
TU33039 lncRNA upstream 977523 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA upstream 1004331 30431806 ~ 30437988 (-) True G26352
TU33076 lncRNA upstream 1182743 30610218 ~ 30611693 (-) True G26370
TU33115 lncRNA upstream 1372936 30800411 ~ 30875378 (-) True G26403
AMCG00007778 mRNA downstream 19083 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007780 mRNA downstream 28309 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007779 mRNA downstream 108831 29289069 ~ 29296557 (-) True AMCG00007779
AMCG00007772 mRNA downstream 148769 29233759 ~ 29256619 (-) True AMCG00007772
AMCG00007771 mRNA downstream 283075 29114380 ~ 29122313 (-) True AMCG00007771
AMCG00007782 mRNA upstream 1180 29428655 ~ 29437506 (-) True AMCG00007782
AMCG00007786 mRNA upstream 146859 29574334 ~ 29585227 (-) True AMCG00007786
AMCG00007789 mRNA upstream 189796 29617271 ~ 29640100 (-) True AMCG00007789
AMCG00007794 mRNA upstream 248442 29675917 ~ 29683071 (-) True AMCG00007794
AMCG00007791 mRNA upstream 301407 29728882 ~ 29735699 (-) True AMCG00007791
TU31949 other downstream 3773796 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 4140437 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 5137467 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5432723 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 8932684 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5441960 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 7812614 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 8067436 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 8140142 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 8143482 37570957 ~ 37571488 (-) True G27439

Expression Profile