RNA id: AMCG00007784


Basic Information

Item Value
RNA id AMCG00007784
length 2658
RNA type mRNA
GC content 0.59
exon number 21
gene id AMCG00007784
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29437666 ~ 29485183 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGGCCTGGATAAGGAAGAGGAACCTGCCTACAGACTCTACTTCTATTCTGTAGatgcTAGTTCACATGTCGCGGCTGGGGCTTCCTTCCAGCGCTCCAACAGCCATGACAAGGTGAGGAAAATTGTGGCCGAGGAGGGCCGCACTGCCCGCAATTTGATCGCCTGGAGCGTACCCCTGGAGAGCAAGGAAGAGGAAGgcaAATCCAAGCCTCCGACTGCCAGCAACCCAAGGCCCCACAGACTCAATTCAGGCCCGCCCAGAAACAAGAAACAGAATGTGGGCCTGGACTGCAAGAGTGCAGCCGGAGCGTCGATTGACAAGAACACCGAGAAGAGCCCCACTAAGGCCAGGCAGCCCCGCAAGGTGGACCTGAGGGCTCGCTACTGGGCCTTCCTCTTCGACAACCTGCGCAGGGCTGTGGACGAGATCTATGTCACGTGCGAATCGGACCAGAGCGTCGTGGAATGCAAGGAGGTGCTGATGATGCTGGATAACTACGTCAGGGATTTCAAAGCCTTAATTGACTGGATTCAGCTCCAAGAAAAGCTGGAGAAAACAGATGCCCAGAACAGGCCCACGTCTCTGGCTTGGGAAGTACGAAAGATGTCTCCAGGGCGCCATGTGATGTCCAGTCCATCCACTGATCGGAACAACCCCTCATCCAGTGCACGAAGGACACTCAATTTTGGAGGTCCTCCTCCTACCCTGGCCACAGCTCGCCTCACTCCTACAGGCACTAGCTGGGCAGACAAGGTGAAGGCCAGTCACTCTTCCAGCCGCAGTGTCCCCGGGATGCCCCTGCCTACCTCACACTCCCTCCCGCCCTGCCCCGCTGAGAAACCCGGGAGGAAGGACGCAGAGGGCTGGGAGACGGTACAGAGAGGCCGGCCTGCGCGACCCCGCTCTGCTGCCATGGTGACCAAAGCCAGCCCCGCCCCTGTGCCCCAGAGCCCCAAAGATGACAGTGACAAAGAGAACATCCAGCACGGACCCTCAACCCAGAACCTGGACCCATCGCCCCCTGAGAGCAAGACCGAGCCCCCGACTCCTGAGGACAAACCTGGTGTCCTCAAAACAGACATCATTCAGttgtcCCTGGAAGATGGGCCTCAGGATTCAGGGCCGTCTGGCAGCGCACCCTCGCAGGAGGAGGGGGACCGGCAGCGGGCTCAGCCTCCCGAGATCCACACAGACGTGCTCTGTCCCTTGCAGGGCCAGGAGGTCAGCCCTACTCTGGCAGCATCTGCTCCAGAACAGACTCCCAGTGCCGCTGTGAAACTGGAGAGCGTGCTGGACCCCATAGAGCTTTCCACTACACAGTCGATGGCGGAGGTACTGGCTAAGAAGGAGGAGCTAGCAGACCGACTGGAGAAAGCCAATGAAGAGGCCATCGCCAGCGCCATCGCCGAGGAGGAGCAGCTGACTCGAGAGATCCAGGCTGAGGAGAACAATGACCTGGAGACGGACAATGAGAGCGACTTCTCTGCCAGCATCGGCAcccGGGAGCCTTGGCGTCAAAGCACATCCTGGGGTGACATCGTGGAAGAGGAACCAGCCCGCCCACCTGGCCATGGCATCCACATGCATGAGAAACTCTCTTCTCCCTCCCGCAAGAGAACCATCGCTGAATCCAAGAAGAAACACGAGGAGAAACAGCTGAAGGCCCAGCAGCTCCGCGAGAAGCTGCGTGAAGAGAAAACCCACAAGCTGCAGAAGCTGTTAGAGAGGGAGAAGGAGGTAAGGAAATGGAAGGAGGAGCTGTTGGAGCAAAGGCGCAAGATGATGGAGGAGAAGCTTCTTCACGCAGAGTTCAAGCGTGAGCTGCAGCTGCAGGCTATAGTGAAAAAGGCACAAGAGGAGGAAGCCAAGGTGAACGAGATTGCATTCATTAACACGCTGGAGGCTCAGAACAAGAGACACGACGTGCTGGCCAAGCTGAATGAATATGAGCAGCGGCTCAGCGAGCTGCAGGAGGAGAGGCAGCGGCGGCAGGAGGAGAAACAGGCCCGTGATGAGGCAGTACAGGAGCGGAAGCGGGCTCTGGAGGCGGAGCGGCAGGCGCGGGTGGAGGAGCTGCTGATGAGGCGCAGGGAGCAGGAGGCGCGCATCGAGCAGCAGAGACAGGAGAAAGAGCGGGCGAGGGAGGATGCTGCGCGAGAGAGGGCCAGAGACCGAGAGGAGAGACTGGCTGCCCTCAGTGCAGCTCAGCAAGAGGCAGTGGAAGAACTGCAGAAGAAAATACAGCTCAAGCACGACGAGAGCAGCCGGCGGCACATGGAGCAGATAGAGCAGCGGAAGGAGAAGGCAGCTGAGCTGAGCAGCGGGCGCCATGCCAACACCGACTACGCCCCCAAACTCACGCCGTATGAGCGCAAGAAGCAGTGCACTCTGTGTAATGTCACGATCACCTCGGAGGTCCACCTGTTCAGCCACATCAAGGGCAAGAAGCATCAGCAGGCAGTCCGAGACAGCAGCAGCATCCAGGGCCGGGAGCTCTCCGATGAAGAAGTGGAGCACCTGTCTCTGAAGAAGTACATTGTGGACATTGTGACAGACAGCTCTGTCGCCACTGAGACGGCAAAAGACGGAGAGGAGAAGCAGAAGGCAAGAAAGAAAGCCAAGAAGCTCCGAGCACGGATGAACTCCAGGTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24869 SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32837 lncRNA upstream 61788 29374376 ~ 29375878 (+) True G26171
TU32833 lncRNA upstream 69943 29367373 ~ 29367723 (+) True G26167
TU32804 lncRNA upstream 125722 29311623 ~ 29311944 (+) True G26146
TU32753 lncRNA upstream 355285 29074456 ~ 29082381 (+) True G26103
TU32676 lncRNA upstream 536540 28900058 ~ 28901126 (+) False AMCG00007763
TU32864 lncRNA downstream 54500 29539683 ~ 29540062 (+) True G26196
TU32910 lncRNA downstream 227316 29712499 ~ 29724420 (+) True AMCG00007788
TU32916 lncRNA downstream 241211 29726394 ~ 29729537 (+) True G26243
TU32926 lncRNA downstream 253519 29738702 ~ 29741082 (+) True G26249
TU32937 lncRNA downstream 269857 29755040 ~ 29819552 (+) False G26258
AMCG00007785 mRNA upstream 633 29433012 ~ 29437033 (+) True AMCG00007785
AMCG00007781 mRNA upstream 35665 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007777 mRNA upstream 76179 29355051 ~ 29361487 (+) True AMCG00007777
AMCG00007776 mRNA upstream 85784 29351070 ~ 29351882 (+) True AMCG00007776
AMCG00007773 mRNA upstream 95086 29339646 ~ 29342580 (+) True AMCG00007773
AMCG00007787 mRNA downstream 101290 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007788 mRNA downstream 137128 29622311 ~ 29724734 (+) False AMCG00007788
AMCG00007796 mRNA downstream 444565 29929748 ~ 29941831 (+) True AMCG00007796
AMCG00007797 mRNA downstream 459937 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007798 mRNA downstream 903010 30388193 ~ 30401103 (+) True AMCG00007798
TU32711 other upstream 433893 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 982959 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1342925 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5243185 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6244145 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 280645 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 6125933 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8659801 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8683387 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 8870746 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile