RNA id: AMCG00007788


Basic Information

Item Value
RNA id AMCG00007788
length 1356
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00007788
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29622311 ~ 29724734 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCAAGGGCCCAACCTGGCGGGGGCCGCGACTCCCTGATGTTCCCGTTGCCCTCGTCGTCAGACTCCCCAGTGGCTAGGCCGTCCACCACCTTGAACTTGGTGCTCTGCTTGCCCCACACGTGGTGGATCTGCATGGCTGCCTCCCTCTCGGCCGCCAGGTCCAGGTCCTGTTGTGCCAGGTGCGCCCGCAGCTGCCGGATCTCAAACtgcaaacacagcagcacagactcAATCACAACCAAACAGTGTCCAGACGCCTTCCCTCCAGTCACTCACCGCCTGCTCCTGACAGATCTGCGTGAGCCTCTCCAGCTGCTCCTCTCGCATGGCCTTGCCCTTCTCATACTGCTGGATCACCATCTCCATCTCAACTTTCACCTGCAGGACGTAGGCTGCAACGACAACAACGACACACAGCACCTCAGTCCAGCTGCCCTGTCCCACACCTTGTTCAAAGATACCCAGGACCACGATCCTAAAGAcagtctgaaaaagaaagaaaaagaaaggatgGAGCTTGGTGTCTATGAGGAGCTCCAGAGCCAGAAGAaccaccaccagcaccacaCATGCCACCAGGATGCAGTTGAGGCCAGCACTGAGCAGAAACACCTGCCAGACTGCTGCCCGTCGACCACAGCACGGCTTGAGCCAGTTAGAGCTGGAGACAGGGAGCGCAGGACAGGCAGAGGGGAAGGAGATGAGTTTCAGTGTGGGAAGCACCGAAAGTCTTCCAGCAGTATGACAAACCTCAGAAGAGTCAATGAAATGGCTAAACACCGGGCTCACCACCTCAGTCTGCTCACTGTTCCAGTCAAGAAGATCGATGGCCTGAACTCTATGAATAAGTATACTCCATTTGTCATGACAAAGAACCACTGCGTCACTCAATGCAACTATGTCTCGCAGACTGGAAAGCTATACGTTCAAAGCAATTTCCCCTCCAACACTGCCATAAATGCACGGGTTAGAGAGAAGCTGAGAGCCGGCCAGGGAGAGGTCCAAGGCAGCCAGAGTCACCTGAGCTGGGCTTTGAACAGGGCGTTGTTCTGCATTCTCAAACTGAACATCTGTAACAGGAGTATTCAAGGTCAGGATGATGGAGAATGGTACTTACTGAGGGCTGGTCATGGTGAAAGAGTTGGCTGCAAACCAGGCTACAAAGGAAGCAGATGTGAGGAGCTCCAGCTACTGAGCAGTTCCAGCAATGATGACGAGAAGGGCTTGATAGCAGTGATGGTTATTCTGGTGCTCCTTATTCTCATTGTTCTCGCTGTGGTGATCTATTGTGCTTGCAAGTTTCggagaaagaaagacattcACACCAACAGAatatctatatataaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32864 lncRNA upstream 82249 29539683 ~ 29540062 (+) True G26196
TU32837 lncRNA upstream 246433 29374376 ~ 29375878 (+) True G26171
TU32833 lncRNA upstream 254588 29367373 ~ 29367723 (+) True G26167
TU32804 lncRNA upstream 310367 29311623 ~ 29311944 (+) True G26146
TU32753 lncRNA upstream 539930 29074456 ~ 29082381 (+) True G26103
TU32916 lncRNA downstream 1660 29726394 ~ 29729537 (+) True G26243
TU32926 lncRNA downstream 13968 29738702 ~ 29741082 (+) True G26249
TU32937 lncRNA downstream 30306 29755040 ~ 29819552 (+) False G26258
TU32938 lncRNA downstream 30306 29755040 ~ 29766096 (+) True G26258
TU32935 lncRNA downstream 43459 29768193 ~ 29775035 (+) False G26258
AMCG00007787 mRNA upstream 13714 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007784 mRNA upstream 137128 29437666 ~ 29485183 (+) True AMCG00007784
AMCG00007785 mRNA upstream 185278 29433012 ~ 29437033 (+) True AMCG00007785
AMCG00007781 mRNA upstream 220310 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007777 mRNA upstream 260824 29355051 ~ 29361487 (+) True AMCG00007777
AMCG00007796 mRNA downstream 205014 29929748 ~ 29941831 (+) True AMCG00007796
AMCG00007797 mRNA downstream 220386 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007798 mRNA downstream 663459 30388193 ~ 30401103 (+) True AMCG00007798
AMCG00007799 mRNA downstream 684297 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007800 mRNA downstream 705106 30429840 ~ 30438133 (+) True AMCG00007800
TU32711 other upstream 618538 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 1167604 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1527570 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5427830 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 6428790 23189460 ~ 23193521 (+) True G24824
TU32939 other downstream 41094 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 5886382 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8420250 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8443836 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 8631195 38355929 ~ 38412929 (+) False AMCG00007957

Expression Profile