RNA id: AMCG00007789


Basic Information

Item Value
RNA id AMCG00007789
length 1455
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00007789
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29617271 ~ 29640100 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTAACTGGCTCAAGCCGTGCTGTGGTCGACGGGCAGCAGTCTGGCAGGTGTTTCTGCTCAGTGCTGGCCTCAACTGCATCCTGGTGGCATGtgtggtgctggtggtggtTCTTCTGGCTCTGGAGCTCCTCATAGACACCAAGCTCCTGCAGTTTACCAATGCATTCCAGTTTGCAAGCATCATTCACTGGATCAGTCTCGTCATCCTTTCTGTGTTCTTCACAGAGactgTCTTTAGGATCGTGGTCCTGGGTATCTGGGATTACATAGAGAACAAAGTTGAGGTCTTTGATGGTGCTGTAATTGTCCTCTCTCTGGCCCCAATGGTGGCCTCAACAGTAGCCAATGGACCCAGCAGTCCGTGGGACGCCATCAGTCTCATAATTACGCTGCGTATATGGAGAGTCAAGAGAATCATTGACGCCTACGTCCTGCAGGTGAAAGTTGAGATGGAGATGGTGATCCAGCAGTATGAGAAGGGCAAGGCCATGCGAGAGGAGCAGCTGGAGAGGCTCACGCAGATCTGTCAGGAGCAGGCGTTTGAGATCCGGCAGCTGCGGGCGCACCTGGCACAACAGGACCTGGACCTGGCGGCCGAGAGGGAGGCAGCCATGCAGATCCACCACGTGTGGGGCAAGCAGAGCACCAAGTTCAAGGTGGTGGACGGCCTAGCCACTGGGGAGTCTGACGACGAGGGCAACGGGAACATCAGGGAGTCGCGGCCCCCGCCAGAACCTGTTGTACGTGATGATATGAACAACTACATCAGCCAGTATTACAGTGAGCCAAGCAGTGATGTGGGCGTCCCAGAAGGGGGCATGCGGCTCATCACCACGACGGCCATCGACGTGCACCTGCCCAACAACCCCAACAACGTGTCCTCCGACCTGCTGACGGTGGAGAACACCACCCGGCTGCAGCGCGCCAGCAGCTCCATGAGCGACACTTCGGCCTCCATGTCCCGCTCCAGCGACAGCTCGGCCACCCGCAACCTGAGCCCCAGCAGCCCTACGGTGGGCTCCTCCACGGACTGTAGCACCACGCGCGAGGCCTCCTCCGACTACTGCCCCTTGGAGCGGAATGGGAGCCGGCGTCACTCGCACCGCCACCACCCCCTGCCTCTGCCCCTCCACCAGGAGCAGCTGGGGCCGGGGGGGCAGCGGGACGCCAGCACTGTGGTGCAGGagctcctctcctccctctctgaggACTCCTGCCTGACCCAGAAAGGCCTGGACCCAGTCAACCTCAAACTACCCAGCCCCGCCGGTTCCCCCAAAACCAGCCCCGAGCTGGAGCACAGAGTCAACATTTACAACAGGAAGAATCAGGAGAGCCTCAACGTATTCCAGACTAAGCCTCTTATCCACCTACAGGGGAGTGAACCCTCCCTGGAGGAGAAGTACCGGTTCCTGGATACCGCCGATGCCCCTCTGAGCCGCCTGCCCGACACA

Function

GO:

id name namespace
GO:0050803 regulation of synapse structure or activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32901 lncRNA downstream 8675 29608317 ~ 29608596 (-) True G26231
TU32831 lncRNA downstream 251026 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 305328 29311618 ~ 29311943 (-) True G26147
TU32768 lncRNA downstream 384563 29230943 ~ 29232708 (-) True G26115
TU32742 lncRNA downstream 568106 29031410 ~ 29049165 (-) True G26092
TU33039 lncRNA upstream 764898 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA upstream 791706 30431806 ~ 30437988 (-) True G26352
TU33076 lncRNA upstream 970118 30610218 ~ 30611693 (-) True G26370
TU33115 lncRNA upstream 1160311 30800411 ~ 30875378 (-) True G26403
TU33130 lncRNA upstream 1263569 30903669 ~ 30903895 (-) True G26416
AMCG00007786 mRNA downstream 32044 29574334 ~ 29585227 (-) True AMCG00007786
AMCG00007782 mRNA downstream 179765 29428655 ~ 29437506 (-) True AMCG00007782
AMCG00007783 mRNA downstream 189796 29405388 ~ 29427475 (-) True AMCG00007783
AMCG00007778 mRNA downstream 230966 29379044 ~ 29386305 (-) True AMCG00007778
AMCG00007780 mRNA downstream 240192 29376246 ~ 29377079 (-) True AMCG00007780
AMCG00007794 mRNA upstream 35817 29675917 ~ 29683071 (-) True AMCG00007794
AMCG00007791 mRNA upstream 88782 29728882 ~ 29735699 (-) True AMCG00007791
AMCG00007790 mRNA upstream 98638 29738738 ~ 29750579 (-) True AMCG00007790
AMCG00007792 mRNA upstream 117356 29757456 ~ 29765855 (-) True AMCG00007792
AMCG00007793 mRNA upstream 125838 29765938 ~ 29774953 (-) True AMCG00007793
TU31949 other downstream 3985679 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 4352320 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 5349350 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 5644606 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 9144567 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 5229335 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 7599989 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 7854811 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 7927517 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 7930857 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048867 True 2529 mRNA 0.52 12 NC_007136.7 32787363 ~ 32869794 (-)
eurasian perch (Perca fluviatilis) TU42059 True 2324 lncRNA 0.41 2 NC_053114.1 33081722 ~ 33084480 (-)