RNA id: AMCG00007796


Basic Information

Item Value
RNA id AMCG00007796
length 1655
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00007796
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29929748 ~ 29941831 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATCCACCGCCTGCAAGAACTGCACGACACGTTTCCTACAACTTTCGCTCAAAGATGCAGAGGTCATCTACCCATGTGAAATCTGCAACCGACGCATCAGAAAGACCCCCGTGGGCCGCATTCAAATAGCCGAGCATGTGCACGGCTACAATGTTTCCGCTATTCGATTTGTTGCTCTTCTCCTTGATCCTGTGCCCATGTGGGTGGTGGACAAGATCCGTGTGTCTGTGGAAAGAACAAATCTGGCTCTCCCCGTAGCGGAATACAGTTTCAAAATCGTAGACATCATGTTTGGAGGAGACAAATcttcagagaaaaacaagaaaatctcCATGTGTCCAAATATCATCACCCCAGATCGCATTCCTGAGTTCTGCATCCCACCCAAATTCTCCTCCCAGCAGGATCTAAAGCCTGCTGAACCGATCAAGCCCACTCCCAGCATAAAGATTTCCATGTCGGAGAAGGGAAGCCCCAGAAAAGAAGCCCTGATCCAAGAACTGCCCAACACGCACGTGATCCAGGTGGAAAGTGTTGATGAGATGCCCTTCGACTATGGATACAGTGATGAAGAGAGCACCAATGCAGATCCCCAGTCCCAAGCCGCTCTTTCCTTGCCCCACCTGGCGAAAGCCCAGACCTGCTATGGATTTTGCACTTTACTAGAAAGCCCCCACACCCGGAGAAAGGAGTCTCTATTCCACAATGATCCCAACTCCTGTGGAATCCCCATCTTGCTTCCCAAAGGCAGGTGTGGCACTTATTCCAAagtctcctcttcctccttcagCCTCAACTCTCTGACTTCCAGACTGTCACCCAAAAGCTTTCAAAGGCAAGGCACTTTGGACAGTGACACTGCCTCATCCACCGAATCCTCCCCTTTCAGCTCTCCGCTGCTTGCCCGGTCTCCTCCCAAAACATCTTTATTCAAGACATTAAGCCAAGAGAAGCTGTTTTCCAGGActgtcaaaaaaacaacagtagcCAGGAACAACTCGTTGTCAACTGATGAAGGAAGTTCAACAGACAACAGCCCTAATATAATGAGAAGGGCTTCTGAGGGTTTGGTGGAGCCTCTGCCTGGCAGCTATGGTTTAACACCCCCTGCCATTTTCCCAATGGACCTGGTGTACTACCGGGACAGAGTCATGAAGGAAAGTCTAATACCTGTGGGCAGAGAAGGTACCCTAAGACTTTCGGCCGAGTACTGCCCAGATAACCAGAGGCTGCGTGTGCGTCTGATCAGTGCTGAAGGGCTTTATGCCCTCTCTGTGGACCCCAAAAGCATAAACTGCAGTGTCAGCATTTCTCTAGTGCCAGGAAAAATCCAGAAGCAGCGCAGCACTGTCATCAGGAAAAGCCGGAATCCTATTTTCAACGAAGATTTTTTCTTTGACAGGATTTCCGAGGAAGAACTCTCTTACAGGTCCCTGCGGTTTAAAGTAGTAAACAAAATGTCAAGCATGAAACGAGATTATGTCTTAGCTGACTGTGAGCTCCCTCTGATGAGTATTTTACCTGTGTAATGTTTCTGATTGAATATGACTCTCTctttattgatgtatgtatttaaagcactatttatttatacttttatactaTGCAAAGAACTGTTTTGATATtaaattatgacaattatgaGAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32937 lncRNA upstream 110196 29755040 ~ 29819552 (+) False G26258
TU32945 lncRNA upstream 126145 29799757 ~ 29803603 (+) True G26262
TU32935 lncRNA upstream 154713 29768193 ~ 29775035 (+) False G26258
TU32936 lncRNA upstream 154713 29768193 ~ 29775035 (+) False G26258
TU32938 lncRNA upstream 163652 29755040 ~ 29766096 (+) True G26258
TU33009 lncRNA downstream 460734 30402565 ~ 30406647 (+) True G26319
TU33060 lncRNA downstream 568704 30510535 ~ 30522510 (+) True G26360
TU33144 lncRNA downstream 1002470 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 1003472 30945303 ~ 30946095 (+) True G26429
TU33147 lncRNA downstream 1013807 30955638 ~ 30955893 (+) True G26433
AMCG00007788 mRNA upstream 205014 29622311 ~ 29724734 (+) False AMCG00007788
AMCG00007787 mRNA upstream 321151 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007784 mRNA upstream 444565 29437666 ~ 29485183 (+) True AMCG00007784
AMCG00007785 mRNA upstream 492715 29433012 ~ 29437033 (+) True AMCG00007785
AMCG00007781 mRNA upstream 527747 29392907 ~ 29402001 (+) True AMCG00007781
AMCG00007797 mRNA downstream 3289 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007798 mRNA downstream 446362 30388193 ~ 30401103 (+) True AMCG00007798
AMCG00007799 mRNA downstream 467200 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007800 mRNA downstream 488009 30429840 ~ 30438133 (+) True AMCG00007800
AMCG00007802 mRNA downstream 648383 30590214 ~ 30608023 (+) True AMCG00007802
TU32939 other upstream 154713 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 925975 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 1475041 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 1835007 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 5735267 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 5669285 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 8203153 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 8226739 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 8414098 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 8490214 38432045 ~ 38436595 (+) True G27551

Expression Profile