RNA id: AMCG00007798


Basic Information

Item Value
RNA id AMCG00007798
length 5458
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00007798
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30388193 ~ 30401103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgttttattcccctTTACCAGCTCAAATCGAAATTATTCCTTGCAAGATCTGTGGAGATAAATCATCAGGAATCCATTATGGTGTTATAACGTGCGAAGGCTGCAAGGGCTTCTTCAGGCGAAGTCAGCAAAGCAACGCCACCTACTCTTGTCCCCGCCAGAAGAACTGTCTGATCGACCGGACCAGCCGCAACCGCTGTCAGCACTGCCGGCTGCAGAAGTGTCTGGCGGTGGGCATGTCCCGGGATGCGGTGAAGTTTGGCAGGATGTCAAAGAAGCAAAGGGACAGCCTGTATGCCGAGGTACAGAAGCACCggatgcagcagcagcagcgagaCCACCAGCAGCAGCCGGGTGAAGCGGAGCCACTCACGCCCACGTACAGCCTCTCCACCAATGGGCTCACAGAGCTGCACGACGACCTCAGCAGCTACATTGACGGCCACACGCCAGATGGCAGCAAAGCCGACTCAGCCGTGAGCAGCTTCTACCTGGACATCCAGCCCTCGCCCGACCAGTCTGGACTTGACATCAACGGCATCAAACCAGAGCCTATCTGCGACTTCACGCCCGGCTCGGGGTTCTTCCCATACTGCTCCTTCACAAATGGGGAGACCTCCCCCACAGTGTCCATGGCAGAGCTAGAACATCTGGCACAGAACATCTCGAAGTCTCATATGGAAACATGTCAGTACTTAAGAGAAGAACTACAGCAGATGACCTGGCAGGCTTATCTGCAGGAAGAAGTGGAAAACTACCAGAGCAAGCCCCGAGAGGTCATGTGGCAGCTTTGTGCAATCAAAATAACAGAGGCTATTCAGTATGTGGTTGAGTTTGCCAAACGCATTGATGGATTCATGGAGCTGTGTCAGAATGATCAAATAGTGCTTCTTAAAGCAGGTTCTTTGGAGGTTGTGTTTGTGAGAATGTGCCGTGCCTTTGACTCTCAGAACAACACAGTGTATTTTGATGGAAAGTATGCTGGTCCAGAGGTGTTTAAATCATTAGGCTGTGATGACTTGATCAGCTCTGTGTTTGAATTTGGAAAAAACCTGTGTTCTATGCACCTGTCTGAGGATGAGATTGCATTGTTCTCAGCGTTTGTATTGATGTCTGCAGATCGTTCTTGGCTTCAAGAAAAGGTGAAAGTGGAGAAGCTTCAACAGAAAATACAGCTGGCTCTGCAGCACGTTCTGCAGAAGAACCACAGAGAAGATGGGATATTAACAAAGttGATATGCAAAGTGTCTACACTGCGAGCATTGTGCAGCAGGCATACAGAGAAGTTGACGGCTTTCAAAGCAATATACCCGGACATTGTGCGCGCCCACTTTCCTCCCTTATATAAGGAGCTTTTCGGCTCGGACTTCGAGCAGTCGATGCCTGTTGATGGGTAAAAGCCTCCCACTCGTGTGAACGCTGTCTGGAATGTTGGAAGAACCAGAGCTGAATGAATCTGAGACACTTTATGGTGCCCTGCACAAACCAGGAGAGCCGACACGCTGCACAATTTGgggggattttttattttattttccattttgtggatgggggtgggggtgggatcCAAAGCCAATGGGAAAGgagaggtaaaacaaaaatcaagtaAGACTTCTTTATTTAACACTGAACTTGGCCTTTTCATGCATATCGTTTACATCTCGGCATACCTTGTCCAACTGTGAACATTTTCAAACCAGATATTGAATGGAACTGATACAGAATTGGCAAGATGTTTGtatataggaaataaaaataacaatagggATACTGGTTTATTCATTCCCAATCCCATgaaacaatgtcatttttagTAGATTAATGTCAGTACTTATATCCATGTTCCATTGCCTTAGCACTTCTCAAGCCTTTCCCTCagggttatatatttttttctttttggtcaaTGAAGTTGAAATAACTGCAGCTACTGGCTATCTGTTTCACTCTTGATAGAGGACTCTGTTTAAAAGCTCACTTCAATACAGACCTTTGAAAGCAATGCACGATTCACCTAGTCCACTGAATCAGGGTTGATTTGGCACAATCATGTTTGGTTTTCgtatttattctattattttgattgttattCACTCCAGAATTCATTGAGAAAATGGACCCGAAGGCCTTTCCCACATGGGGATGACTCTTGGGCATGTCTACAGAAgccaataaagaaataattatgttttggaAACTATATGCATATATTGGTCAAgttcaaaacctttttttattattattatttttttattttattttattttgttgtatgcaGTGCTCGGAATGCAAACTCAAAATGATTCAGAGAGTTGAGAGAGCACTGTGGTGTGGAGTCCGCCTGTCGGCGATCGTGATATAAACTGCACCTTTCTATGGACAATCGTCTAAATGAAATGTAGAATTCTGGTAATTCTAGTTTAAACATAAAGACTTTAGCTGTCAAAGACTCCATCCTCCATGGTTGCATAGTGAAATCATGTAAGGCCATCTGCTATTAATCCTTCACTGGGGAGGTGTCCTTGTAAAACTGAGGGTACCAACAGAAAAAAAGGGTCCATTACACCAGTTTTATAATGTACTACAGGGTATACAGTCATAAGTACTTACTATacagaaaaaagtaatgtttatagattctattttaaataacatgtatGATATTAGTAGTTAGAATATTCTTTATTGTTGAATTGATAAGGCACTTTTATTTGcacctttcttttatttaagaCTTGTGTATTACCTAGTGATGTGTTGCATGTGCACAAGAAATACAAGTTTAACCACAGATCTGTGGAGGGTAGTCCAGAGAGACATAGATGCTGCTGAATTCCTTGGGTTTTGCTGTGTGGATGTTGAGAAAGCTGGACGCTGCTGAGGTTAGGAGAAGCAGATACTTCACCTCATTTTTAATCCATTACCTTCATTCAGTAAGGATTGCTGTTGACATTCTTTTCAAATactgcctcacacacacatttcccctCTAGATTGATATAAACAGTACCAAAAATTCATCGGTGACAAAAGGATGGTTTAATAGTACATTTGGTCTAAACTCCTGTCTTAAGCACAAGCTTATTTTTAAGGGAATGGACAAACTTAGATGTTATCTGTTCCATTGTATCCCTTTGCCTTTTCCACACTGTCCCTAAAGTTCTAAACTCTGGGGCCTCAATTATAACATTGAGTGaataatgttgctgttttttgtatttctttttaaaggttCTCAGAACAAAATAAGATAAGCTTTCATGGGTAGAAAAACCTTAACCATTCTGTCCTGGTAGATGATTTTCAAACACTCTCACCCCCCTCTACAGCGAGACCATCTGATATGCAAGTTTTGTCAGTGGGTATTACTCTGCACTgcatcattgtatttttatatttttttattttttttaagacccTTTAATGAAACTGCTTTAGTTTTCACAGCTATAGATTCATTCTGGAGTTTCCAATGTCCCAGTAGTACTGTGAATGTGACCCAGCTTTCAAGTTGATCAAATATTTCCAAAACGCTCTGTTGTTGTCACTAGAATGGGCTCCACCTGAGTTTAGTATTTGCCCGGACCCCTTTGTGTAGCttgactgtaaaaccaaaagAGCTTTTGGCAATGCACCTTGAAGACTACTGATACTTATCAGAAGAAAATTGCCATCATAATAATAGGCTgaactggttaaaaaaataattaaggaagTCAGCTATTTTGGGTGATCTCCATTGGCTCCTCTTGACAGGTTACATAAAGACGATGCATTATTCCTTTAACTGTCACTCGCGGACACTGCCAGAGACCTACAATATTTTTGGGTGATGACTCCTCACTCAAGAAAAGGTGCTCCAATTAAGATTTCCCCCACAAAATAATGACAGCTCAAAGCAAAACTGTCAACCGCCTTGGTGAGCAGGGAGGCAAAGGGTTAATGCATACGAATTCGAAACGCAGTCAAAAGGAGCAAATAAATTGAGCTGCCCACGTTGTGATCGGTCTAGTAAAGAAACATGTCAGCTCTGCTTTACTTCAGCAGATAAGCTGCCTATTAGTTCTGcagataattattattttatccaaGCGTGCCACCTAATggctaaaaacaaaatggcagccTTAATGTGTTCTTAAAggtaatagaaaaacaaacatgttccAATAAGAGcttgttagtattattattattattattattattattattattacacagacaaaacattttcttgtgaACATCAGCAGTCCTATTTACAGTATAATGTCCAGTTATTCTTTTTGGTTTTTCTTACAATCTCACCCTCCACTCCTTGTGTGCAagaatgtgtgtaagtgtatatGGGGgggttgatttgtttgtttgtgtgtgtgtgtgtgtagctgctTCTCAATAGTTAGGTGTTAGTCAATGACAACATCTGACAGTCAACAGTAAAAAGACAGGAGacagaaatacaatattcaaaGCCTTGTCTGGTTGAAAAGTTTCTATTTTTGTAACCCTTGAACAAGAGAGATTACAGGTGGCACTTACAATATTCCTGCAATAATGAAATTAGACGTGATTTGTGTACAaaggaaagattttttttaatgcaagacAATGATAGGAAGTactattttctaaatgttttgggggggtttgtTTAGGTtaggttttattgtttgttctcGCCAGAACTTGTCTAAATGTCTTTATGAACCTTTTTCATTTGTACCCGGATGTGCCATAGTAGGTGCTTGTGTTTTCTCTGTGTCAATGAGacaagtgttttttgttgttgttgttgatgtgaCATTCCAAGAAACAAGAAGCATGAATTCTGTTGGAATAATAATAGTTAGGGTTTGTGAGTAGGAAGCTTTGTATCACGGTTGCTTTTTTGCACATGACCTTCATTCCTCAATAGTGCAATATGTGCATAACTCACTTGTTATGTACTGTTATCCctcagggaaaataaataaataaataacagttaattttacagtttattttctgttgaagttgtttttgttgtaattgttattgttgccGTTCTATTTTATCCTCTTTTGGTTTCGTTTGTTTTGCTAAGGAATGTCAATTGCATAGTTCAGTCAGGTTCCCCACGCAGCAGCCAGTAAAAGATGCACATATTAGTCtttgtgtttatgttgtttttagttATGTACTTTGGTACTGGGTCCCCACTACTCAAACGTAAAGCGGCCTTCAAAAATATTAAGATCTGCCTGCTTTTCCtaatattttcttctaaaaaGCCAAGAACAGAACAAGATTATCAATATAGAAAAAGATGATATGGCACACTGAGCCCCCACCTTTGCTGAATCAATATATCAGatgattttgaatatattagATTCATGCTAAATTCCCATTggaaatagatttaaaaagtaaaatcatgctaaaaatattatacattatatagtATATTTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08532 NR1F1, RORA; RAR-related orphan receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32937 lncRNA upstream 568641 29755040 ~ 29819552 (+) False G26258
TU32945 lncRNA upstream 584590 29799757 ~ 29803603 (+) True G26262
TU32935 lncRNA upstream 613158 29768193 ~ 29775035 (+) False G26258
TU32936 lncRNA upstream 613158 29768193 ~ 29775035 (+) False G26258
TU32938 lncRNA upstream 622097 29755040 ~ 29766096 (+) True G26258
TU33009 lncRNA downstream 1462 30402565 ~ 30406647 (+) True G26319
TU33060 lncRNA downstream 109432 30510535 ~ 30522510 (+) True G26360
TU33144 lncRNA downstream 543198 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 544200 30945303 ~ 30946095 (+) True G26429
TU33147 lncRNA downstream 554535 30955638 ~ 30955893 (+) True G26433
AMCG00007797 mRNA upstream 345012 29945120 ~ 30043181 (+) True AMCG00007797
AMCG00007796 mRNA upstream 446362 29929748 ~ 29941831 (+) True AMCG00007796
AMCG00007788 mRNA upstream 663459 29622311 ~ 29724734 (+) False AMCG00007788
AMCG00007787 mRNA upstream 779596 29586473 ~ 29608597 (+) True AMCG00007787
AMCG00007784 mRNA upstream 903010 29437666 ~ 29485183 (+) True AMCG00007784
AMCG00007799 mRNA downstream 7928 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007800 mRNA downstream 28737 30429840 ~ 30438133 (+) True AMCG00007800
AMCG00007802 mRNA downstream 189111 30590214 ~ 30608023 (+) True AMCG00007802
AMCG00007806 mRNA downstream 209115 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007805 mRNA downstream 330508 30731611 ~ 30774461 (+) True AMCG00007805
TU32939 other upstream 613158 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 1384420 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 1933486 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 2293452 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6193712 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 5210013 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7743881 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7767467 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7954826 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 8030942 38432045 ~ 38436595 (+) True G27551

Expression Profile