RNA id: AMCG00007801


Basic Information

Item Value
RNA id AMCG00007801
length 621
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00007801
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30508882 ~ 30509502 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGACATCAGACCATTTGGCACCAAGCAAGCCATCCGACGCTGCCCACTACCTCCAACAGCAGGCGAAGCTCCGACTGAGCGCGTTGGCCGCTACAGGCACACACCTGCCCCAGATGTCCACCTACAACCTAGGAGTGTCACAGCCATCCACTTTCAAGCACCCCTTTGCCATAGAGAACATAATCGCCAGAGAATACAAGATGCCAGGAGGACTCGCTTTTTCCACCATGCAGTCCATGTCTGCTGGCTACCCTCTGCACAACCAATTGACCACAGTTGGCACCGCCTGGCCCCATATGTACAGCACCAGCGTGATAGACACCGCAGCCCCAATATCAATGGCCAGCAGTGATTACAGTGCCTATGGCGTGCCTATCAAGCCTCTTTGCCACGGAGGACAGACTTTACCAGCAATCCCGGTGCCAATCAAACCCACCCCAGCCTCGGTGCCAGGTCTGTCGGGTTTGCCTGGACCCATTCCGGCCATCCTGTCGAACTCTCCGCCGTCTCTGAGTCCCACGTCCCCCCAGACAGCGACCAGCCAAAGCAGCCCCGCCACCCCGAGTGAGACTTTAACAAACCCCGCTTCTGCACTGCAGTCGGTGGCAGTGCACTGA

Function

GO:

id name namespace
GO:0061374 mammillothalamic axonal tract development biological_process
GO:0061379 inferior colliculus development biological_process
GO:0061381 cell migration in diencephalon biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0021855 hypothalamus cell migration biological_process
GO:0008542 visual learning biological_process
GO:0033504 floor plate development biological_process
GO:0007412 axon target recognition biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0022029 telencephalon cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09395 FOXB; forkhead box protein B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33039 lncRNA downstream 54254 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA downstream 70894 30431806 ~ 30437988 (-) True G26352
TU32901 lncRNA downstream 900286 29608317 ~ 29608596 (-) True G26231
TU32831 lncRNA downstream 1142637 29365624 ~ 29366245 (-) True G26165
TU32805 lncRNA downstream 1196939 29311618 ~ 29311943 (-) True G26147
TU33076 lncRNA upstream 100716 30610218 ~ 30611693 (-) True G26370
TU33115 lncRNA upstream 290909 30800411 ~ 30875378 (-) True G26403
TU33130 lncRNA upstream 394167 30903669 ~ 30903895 (-) True G26416
TU33227 lncRNA upstream 711925 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 735038 31244540 ~ 31246649 (-) False AMCG00007817
AMCG00007795 mRNA downstream 644271 29799746 ~ 29864611 (-) True AMCG00007795
AMCG00007793 mRNA downstream 733929 29765938 ~ 29774953 (-) True AMCG00007793
AMCG00007792 mRNA downstream 743027 29757456 ~ 29765855 (-) True AMCG00007792
AMCG00007790 mRNA downstream 758303 29738738 ~ 29750579 (-) True AMCG00007790
AMCG00007791 mRNA downstream 773183 29728882 ~ 29735699 (-) True AMCG00007791
AMCG00007804 mRNA upstream 104487 30613989 ~ 30614885 (-) True AMCG00007804
AMCG00007803 mRNA upstream 109916 30619418 ~ 30639376 (-) True AMCG00007803
AMCG00007807 mRNA upstream 301292 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007810 mRNA upstream 406858 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007811 mRNA upstream 435110 30944612 ~ 30947926 (-) True AMCG00007811
TU31949 other downstream 4877290 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5243931 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6240961 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 6536217 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10036178 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 4359933 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6730587 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6985409 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 7058115 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 7061455 37570957 ~ 37571488 (-) True G27439

Expression Profile