RNA id: AMCG00007803


Basic Information

Item Value
RNA id AMCG00007803
length 3262
RNA type mRNA
GC content 0.52
exon number 16
gene id AMCG00007803
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30619418 ~ 30639376 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAACCCCCATACACAAACTGGTCGAGCGAGTTCAAGCGTTCAATCCCTGGTGCTCAACTAGGGATGCACACCTGCGGGAGCTTCAACTCGCCGACTGCCGTCATTTATCGTCACTAAAAGCTCTTGTTTTTGCGTGAATGTTAAAGAAGACATGGAGGTTAACACTTTCCAAGCACTGCTTTTGGTGGTTTTCTGCGGATTTGCGCACAGTAAACCTGCGTCGCTGTCCTGTCCCGGCGGGCAGTTTGCGTTGAAGCAGCAGTGCGTCGGCTGCCATCCTACCTGCGCTGAATGCGTCGGTCATGAGCTGTTTGAGTGCACAACCTGTGGAGTGGATGAAGACGGATTGGAGCGGTTTCTGCACCGAGGCCGCTGCAGGCTGCACTGCCCCCGGGGTTACTACCCAGACCGGAATCTGTACACCTGCGAGTCCTGCATGCCCAACTGTGAGATCTGCACTGATGCCGATGTCTGCGCCAAGTGCCAAGAAAGTTACAAACTCCAAAATGGAATCTGCCAGGCAGCTGAGTGTGAAGAAGGCCAAGTCCAAGACCCTGAAACTGGAGAATGCTTTGACTGTGAAGCTGGATGTAAAACATGTTCAACAGATGACCCTGAGCTCTGTAACAGCTGCATGGAAGGATATTTTCTCTACAGACACCAGTGTCGCCGGCGCTGCCCACAAAAGACCTATGAGGATGTTGGGAGGAAAATTTGCTTTAGCTGCCCAGTCCCCTGCACTGACTGCTTTAGTGAGTCTCTCTGCCTTGCCTGTCAGCCTGGCCATTTCTTGACTGAGGGAGGTTGTGTAAAGCAATGCCCTGATGGCACCTACGGGGACACAAACGGCTGGCGCTGCGAGGCCTGTCACAGCTCCTGCCAGAGCTGCCATGGCCTGCTGGTGAAGGACTGTGATGTATGCCCTGATGGGAACCTTCCTCTGTACGGTCAGTGTCCTGCTGCCAGCTGCCTGGAGGGACAGTATTTTGATGCAACCGATGCAAAGTGCTATGCATGTGACATTTCCTGCAAGACCTGCTTTGGGCCTCAAGCTCTGGACTGCTCCTCATGCTTTACAGGCTATCTACTGGACCAGGAGGGCTCCTGTGTGGAGCACTGCCCTGCTGGGTACTTTGTTAAGTCTGAAAGCCAGCTGTGTGAGGAGTGCTCTCCCAACTGTGAGACATGCGAGGAGACTAGTGACACGTGTGTCAGCTGTAAGAAAGGCAAATACAGACTCTTCCTTCATGAAGGGAAGTGCTGGTCAAATTGCCCAGAAGGTTACTTTGAGAGAGTGGAAGGCACATGTGAGGCCTGTGATGACTCCTGTCTTACATGTGACGAAAACAAGTACAAGTGCCTGTCTTGTGTGAAGGGGCTGTACCTGGAGAATCACCAGTGCAATGGCAACTGCTCCTTCGGGAGCTACCCTGCCGAGGATGGGACCTGCAGCCGCTGCTCTGCTCACTGTGATGTCTGCACTGACGCCAACACCTGTATGAAATGCAGTTTTTTGTACCTGCTTCTCAATGGTGTCTGCAAAGCAAATTGTCCTGATGGTTACTATGAGGACCTGGACAAAGGCAAGTGTGTTCCATGCCACCCTACCTGTGCCACCTGCTCGGGGCCAGAGACGGATGATTGTGAGAGCTGCTCACTGCAATATCCCAGGCTGTACGATGGTCGCTGCTCTGAGGACTGTCCTCCAGGAACCTATTATGAGATTTCAGCCAGTGAATGTCAGGAGTGTGACCTGACCTGTGCCAGCTGTTTAGGCCCAGAGGCAACACAGTGCATTAAATGTAAGGAAGGCTTGGCACTAGATCAAGAAACCAGGATGTGTGGTGTCACCGGTGACTCCAACTGCCCCCCCAAAATGTTTCTTCATGAAGATCGTTTCACTTGCAATGCTTGTCACCGCCAGTGTGAATCGTGTGTGGGCCCTGCTGACACAGACTGCCAGACCTGCGCAGTGCCCAGTTACTTGTACAATGGCACATGTGTGACGGGATGTCCTGGGGGCACCTTCCAGTCCAGTGAGGAGGCAGACAGAGTGGAGCTCGGTTTCTGTTCGGTGTGTGACCATGTCTGTGACACCTGTACTGGGGCCTCGCCCAAGGACTGCATCACTTGTTCTTCAGGCTATTTAAAATTCCTTCACCTCTGCATCTCCCACTGTCCCACAGGGTACTATCGTGAGAAGACTCGATGTGAGAAATGTGACTCTTCCTGTGGCCGCTGCTCTGGCCCTGGCATTAAGTCCTGCCTggcctgccccccccacctgcTGGAACTGGAAAGTACCAAACTCTGTGTAGAGCACTGCCCTCAGCGATTCTACCAGCAGGACCACAAGTGCAGACAGTGCCACACTAGCTGTAAAACTTGTAAAGATGCCACCCCTCAGGGATGTCTTACCTGTGACAGGGGCAGTACCCTGCAGGATGGGATCTGTTACCCTCGCTGTGAAGAAAGGCATTACTTCTCTGAGGATgAGCTTTGTAAGCTATGTGATCCCTCCTGCAGACACTGTTCAGGCCCGGGCCCACATCAGTGTTTGACATGCAAGCCTAACTTCAGTCTTCATCCTCTGGAAAACCGGTGTGATAGATGCTGCGAGTCAAAGCTCAACAATACTAACTGCTGCCACTGTAGTACCAACTCAGCGCTTTGTGTAGAGGTCTCCTTCCCCATGTCGGAGCACACTCTTCTATCTGGGAAGGCAGACTCTCAGATGCCAAGTCACGCATCCATAGCACTGCCTGCCCTGCTGGTGCTGGCCCTGGTGTTGGGGCTAGCCATGTTCGCACTCTTCCAGGCCAGGGCGAGGAAGAGACTGTGCTGGAAACAGAGCTATGAGAGACTGAGTGGCAGTGCTAAggctgccccccccacctctaCCATGCTCCATGGCGTCCCGGGCCCCGAGGACAGCGGTGACGAGACTGATGTGGTTTACACCAGCAGGGATGGCACGGTCTACCGACGCTACAACTTCATCAAGGCTGAGGATGGAGAGGATGACAATGAAAACACTTACTTGAGCAAATCTTAGGGCCAAGATCTGTGTGAAATGTGTAGTGGTTTGCTGAATACGTGCCTTCAGTAGGAACATGATGCTTCACACACAAATTCATATTTAGAAAGTAATTTTTGTATGATGCTTCATCTTTTTGATAATTTGAGGATGTATCCTAAATAAAAAGATTACAGAAACCATACCTTTATCTAGTACTTTGGATATGATCTAACCACTATGGA

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33076 lncRNA downstream 7725 30610218 ~ 30611693 (-) True G26370
TU33039 lncRNA downstream 164790 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA downstream 181430 30431806 ~ 30437988 (-) True G26352
TU32901 lncRNA downstream 1010822 29608317 ~ 29608596 (-) True G26231
TU32831 lncRNA downstream 1253173 29365624 ~ 29366245 (-) True G26165
TU33115 lncRNA upstream 161035 30800411 ~ 30875378 (-) True G26403
TU33130 lncRNA upstream 264293 30903669 ~ 30903895 (-) True G26416
TU33227 lncRNA upstream 582051 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 605164 31244540 ~ 31246649 (-) False AMCG00007817
TU33235 lncRNA upstream 699469 31338845 ~ 31342792 (-) False AMCG00007822
AMCG00007804 mRNA downstream 4533 30613989 ~ 30614885 (-) True AMCG00007804
AMCG00007801 mRNA downstream 109916 30508882 ~ 30509502 (-) True AMCG00007801
AMCG00007795 mRNA downstream 754807 29799746 ~ 29864611 (-) True AMCG00007795
AMCG00007793 mRNA downstream 844465 29765938 ~ 29774953 (-) True AMCG00007793
AMCG00007792 mRNA downstream 853563 29757456 ~ 29765855 (-) True AMCG00007792
AMCG00007807 mRNA upstream 171418 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007810 mRNA upstream 276984 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007811 mRNA upstream 305236 30944612 ~ 30947926 (-) True AMCG00007811
AMCG00007812 mRNA upstream 323668 30963044 ~ 30982020 (-) True AMCG00007812
AMCG00007815 mRNA upstream 464402 31103778 ~ 31111738 (-) True AMCG00007815
TU31949 other downstream 4987826 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5354467 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6351497 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 6646753 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10146714 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 4230059 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6600713 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6855535 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6928241 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6931581 37570957 ~ 37571488 (-) True G27439

Expression Profile