RNA id: AMCG00007804


Basic Information

Item Value
RNA id AMCG00007804
length 897
RNA type mRNA
GC content 0.47
exon number 1
gene id AMCG00007804
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30613989 ~ 30614885 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGAGAGACTTCTTCGTGCCATATACACCCCTCAGAATGTGTACTGTGTACATGTGGACCAAAAATCTTCAACTGACTTCAAGAATGCCGTGAGGGCCATTGTGTCCTGTTTGCCGAATGTGTTTGTGGTGAAAAAGCTGGAAAAGATAGTCTACGCATCGTGGTCGAGGGTGCAGGCTGACCTGAACTGTATGGAAGATTTGCTCAACTCAACGGTACAATGGAGATATCTTCTAAATACCTGTGGGACCGATTTTCCAATAAAAACCAACGCGGAAATAGTACAGACCCTTAAATTCCTGAATGGCAAGAACAGCCTTGAATCGGAGCCTCCACCACAGCACAAGAAAGACCGTTGGATTTACCATCACGAAGTCAAAGATTCCATAACCAGGACGGAAACCAAGAAGATCCCCCCACCTATCGACTCTCCCATGTTTGCTGGCAACGCTTATTTTGTTGTCACTCGTGAATTTGTCCAATACCTATTTGAAAATCCCAAGGTGCAGAATCTACTGGAATGGTCAAAGGACACGTACAGCCCGGATGAACATCTCTGGGCGACTTTACAGAGAATGCCTGGAGTACCAGGATCCATTCCCAGCAATTCCAAATTTCACACCACGGATTTGCAGGCCATAGCTCGACTAGTAAAATGGGAGTATTTTGAAGGCGACACAAGGAAAGGGTCACCCTATCCACGTTGTTCTGGCATTCACCGGAGAGCAGTGTGCGTCTATGGTAGTGGGGACCTCCATTGGATGCTACCTCAGCACCATCTATTCGCGAACAAATTTGACCCTGAAGTGGATGACGTTGCCATCAAATGCCTAGAGGTGCACCTTCGTGACAAAGCAGTCAATGGCAAGAGACTAGGGACAATCTTGAGTTAA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33076 lncRNA downstream 2296 30610218 ~ 30611693 (-) True G26370
TU33039 lncRNA downstream 159361 30404998 ~ 30454628 (-) True G26342
TU33049 lncRNA downstream 176001 30431806 ~ 30437988 (-) True G26352
TU32901 lncRNA downstream 1005393 29608317 ~ 29608596 (-) True G26231
TU32831 lncRNA downstream 1247744 29365624 ~ 29366245 (-) True G26165
TU33115 lncRNA upstream 185526 30800411 ~ 30875378 (-) True G26403
TU33130 lncRNA upstream 288784 30903669 ~ 30903895 (-) True G26416
TU33227 lncRNA upstream 606542 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 629655 31244540 ~ 31246649 (-) False AMCG00007817
TU33235 lncRNA upstream 723960 31338845 ~ 31342792 (-) False AMCG00007822
AMCG00007801 mRNA downstream 104487 30508882 ~ 30509502 (-) True AMCG00007801
AMCG00007795 mRNA downstream 749378 29799746 ~ 29864611 (-) True AMCG00007795
AMCG00007793 mRNA downstream 839036 29765938 ~ 29774953 (-) True AMCG00007793
AMCG00007792 mRNA downstream 848134 29757456 ~ 29765855 (-) True AMCG00007792
AMCG00007790 mRNA downstream 863410 29738738 ~ 29750579 (-) True AMCG00007790
AMCG00007803 mRNA upstream 4533 30619418 ~ 30639376 (-) True AMCG00007803
AMCG00007807 mRNA upstream 195909 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007810 mRNA upstream 301475 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007811 mRNA upstream 329727 30944612 ~ 30947926 (-) True AMCG00007811
AMCG00007812 mRNA upstream 348159 30963044 ~ 30982020 (-) True AMCG00007812
TU31949 other downstream 4982397 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5349038 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6346068 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 6641324 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10141285 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 4254550 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6625204 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6880026 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6952732 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6956072 37570957 ~ 37571488 (-) True G27439

Expression Profile