RNA id: AMCG00007805


Basic Information

Item Value
RNA id AMCG00007805
length 6814
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00007805
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30731611 ~ 30774461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACGTAAAAACTGGGACCTGAGCGCTGCCCTGAATGACTATGAGCAGCTCCGGCAGGTCCACACTGCCAACCTGCCACAGGTCTTCAATGAGGGCCGCTACTACAAGCAGCAGGAGCGAGACACCCCCCAGCACCTGAGCAAGATCGAGCGGCCATGTCTGCAGAGGCAGGATGACATTGCTCAAGAGAAGCGCCTCTCTCGGGGAATCTCCCACGCCAGCTCTGCCATCGTGTCCCTGGCCCGCTCCCACGTCGCCAGTGAGTGCAACAGCGAACAGTTCCCCCTTGAGATGCCCATCTACACATTCCAGCTGCCTGACCTCAGTGTCTACAGTGAAGACTTCAGGAGCTTCATTGAGCGGGACCTCATTGAGCAATCCACCATGGTCGCGTTAGAGCAAGCAGgtCGTCTGAACTGGTGGTCCACAATGTGTACCAGTTGCAAGCGGCTTCTTCCACTGGCCACAACAGGGGATGGAAACTGCCTCTTACACGCTGCTTCATTGGGGATGTGGGGCTTCCACGACAGGGACTTGGTGTTGAGAAAGTCCCTCTACGCCATGATGAAGAGCGGAGCGGAGAGAGAAGCGCTGAAGAGGCGGTGGCGATGGCAACAGACGCAGCAAAACAAGGAGTCAGGGCTGGTGTACACGGAGGAGGAGTGGGAGCGGGAGTGGAATGAACTGTTAAAGCTGGCCTCCAGTGAGCCTCGCACACACTTCAGCAAGAACGGCAACACCAGTGGCGGCGTGGACAACGCAGAGGACCCTGTGTATGAGAGTCTGGAGGAGTTCCATGTGTTTGTCTTGGCCCATGTCCTGAGGCGCCCCATCGTGGTGGTGGCAGACACAATGCTGAGAGACTCTGCTTTTGCACCTATTCCTTTTGGAGGTATATACTTACCTCTGGAGGTCCCTCCAAACCGCTGTCATTGCTCACCACTGGTCCTGGCTTATGACCAGGCCCACTTTTCCGCACTAGTGTCTATGGAGCAGAAGGACCAGCAACGAGAGCAAGCGGTTATTCCACTGACTGACTCCGAACACAAGCTGCTGCCTCTGCACTTCGCAGTGGACCCAGGGAAGGACTGGGAGTGGGGGAAGGATGACAATGATAATGCTAAGCTGGCCAATCTTATCCTGTCTTTGGAAGCAAAACTGAACCTCCTGCACAACTATATGAATGTAACATGGATTCGAATTCCATCGGAAACAAGGGCTCCACTGGCTCAGCCAGAGTCTCCCACAGCCTCCGCTGGAGAGGATGTGCAGTCGCTGGCTGACTCCATGGACTCAGACCGAGAGTCTGTCTGCAGCAACTCCAACGTCAACAATGGCAAACCCAgtaaggagaaggagaaggacaaGCAGCGCAAGGACAAAGAAAAGAACCGAACGGACTCTGTTGCCAATAAGCTTGGAAGCCTTAGCAAAACCCTGGGGATCAAGCTGAAGAAGAACATGGGGGGACTGGGCGGGTTGGTCCACGGGAAGATCAGCAAATCCAACTCTAGCAATGCCAGGAATGGGGAGAATGGAGAAAAAACCAAGAAGAAGGATTCAAAATCCCGTAAAGGAAGCAAAGAAGAGTCTGGGCAATCTGCCAGCACGTCCTCCTCAGAAAAGACCACCAGCCCTTCTCCCACGGACAGGGCTTCTGGAGCATCCCCTGTGGAAAAAAGGAACAGCTCTGTGAAGCCCACTGGCGACAAGGTGTCCGACCACTGGAAGTACAGCACTGATGTCAAGCTGAGCCTCAACATCCTCAGAGCCGCCATGCAAGGGGAACGAAAGTTCATTTTCGCAGGCCTCCTCCTGACCAGCCATCGACACCAGTTCCACGAAGAGATGATCAGCTTCTACTTGACCAATGCCCAGGAGCGCTTCAGCGCAGAACAAGAGCAGAAGAGGAAGGAATCGGAGAAGAAGCCCACTGTCAATGGGTCAGCTGCTAAGAAGCCAGAGCAGGAAACCACCTTCCAGAAAGAGAAGACAGACAACTCTCCACGAGAGGGATGCTCTCCAGTGTTGCACCAAAGCCATACCTCCCAGCTGGTTTTGAAGCTGCAGGAGAGGCACAGCCCTAGCCCACCCCCTTTCTCCTCCCCCAGCAATGGTGCTAAAAAATCTGGGCCTATCCCTGTGTCCGCCCACTATAGCCATACGCCACCCATCCAGAGGCAAAGTGTCATTCATCTACGAGACGTCAACTTACAGACATCTGGCTTCCAGGAAGAAACCTATAAGCCCATTGTGGGCACCCTAAAGACCTGCGCTACATACCCGCAGCAGAACCGCTCATTGTCCTCACAGAGCTACAGCCCTGCTCGCATGTCAGGAATCCGCACAGTGAACACAGTGGAGTCCCTCTCCTACACCATGCCTGGGGAACACAAGTCCCACACTTATACCAATGGCTTCAATGCCAACGATGTCCGCGATTGCTTGGAATTCGCAGACGAGGATTCTCCCCAGGCCTGGTTAAACCATGACAAAACCAAAGGCCGCAGCACAGTGTGCCCACTCTACTCACTCCAACAAAACCGGTGCAAGAAAGAGAACTGTTCCTTCTATGGCCGGCCAGAAACTGAGAACTTTTGTTCATACTGCTACAAAGAGGAGCTGAAACGCAGGGAAAGGGAAGGCAAGACACACAGACCTGGATAGCCCATAAAATGCACCAGTGGGTGTAACCAGCTGGTTAAATCAAAGACAGCAGAAGTCCTCTGAggatgacaaaacaaaatatcaccCTGCGTTCTACGAATAATAACAGATAACAGCATACAGTAGACCGTAGCAAATTTCATACTCTATTTATGAacagttttccttttattcttgTTACCTTTCTCTCAATATCAAAGGACACACTTACTTGATAATAAAGAAGGTGGATCTGAAATTACTTTACAGCTTTGGCCGGGGATTTTCCGAATAATGttttagctttatttttattttatttttttattaattttttcaaTTAGTTTGCAGACAGAATACAAATTTAATGAGCatcttaaaaacacagtttttcCCTTATCAAATGGTGCCAAATCATTAGGCAAACTCTTCAATAGCAAAATCATTGTACACCACTTAAATGATAATACAATATAGAGTGGAGCTTTTAGGGGGTGTTATGAATAACAATCAAATTCAACATAGATGTCTTCTAAAAGCTGGCATAGAATATCACTTTGTATTATGTCTTGATAGGAGTTACACCTAGGAAGGAAAATGCACGCCAAGGAAGAATTACAGacatattaaaagcaataaGTTTTCCAAATGTacgtaaactttcttatgtcttTCTTATGTCTGTTCATTTATGTCATAGTTTGTCCTCTGTTTTCTGTAGCATTAATGTTTAAAGGAGCAGAACTGTGATTCTGCAGTCTCTGGCTtcctgttctttaaaaatatattttttgcatctCTACAAAATGTCCGGCACcttaaagcaaaaacattttaaaaataccgGCATTTAAGATGTAATGCAAAGCTTTAAAGCTACTTATGTAAACTGTACATCTTAAGTCAGCTATAAATGTAGGTAAAAAAGTGCtggttttgcatttttagactcaagttttaatttttttgcccccccccaaccctcACCACCATACTCCTGGTAGTTATATTACATGGTAACTGCTTACATGCAAAAATTCCAACTTAATATCCATGtgccaaaaacaataaaattgaatttttaaatacaggtCTGCAGTTGTTCTCAGGTACATAGCAGTGAAATGGGatgctttcaattttttttttataaattcatTTGAGAAGCACTTTGTGCACCAATATACAAGAAACAGGAGGCAAtaaggtgtgtatatatataaccaaaacaaaaataaagtgaaactttaataaaaataaataaataaataaataaaatcggATAGGAAAGTAAAATTAACTCCTCATATTCAATTAGTCTAAATGAGGGTGTGCAATGGCTGTAAGATTGATTCAATGTAAGACAATTAGCAGTCCCTGTCATTGTTTGTCAGGGCTCAAACCTAAACTAACACTAAATAGTTGTCATCTTTCACAAGCTGAAGATATTAAATTATCAGTAAAACTTTATTTCacactttctttccttttgttttcttttaaacgGGATTCCAGAAAATTATTAATGGAAACATTATACTGATTTTTTTATACTGTTATGTTTTGGTtaagctaaaatatatttaccatgGAGAACCCAGTGTAATGTATATGCAACAAGCATTAAACAGGCTTGACAAAAATGTAGTATCCCAATTTAGCAGGTTTCGGTGGTGTATATGTCCCACTGGGTTCCCAAGGCTTCTTTAGTCACAATAATAtcctgatttgttttaaatctggaTCTGTatttagaattgtttttttttattaataaaaaaacaaacaaaaaaagtcataaaCCGTTTCACTTTAGACAAGCTGTCCTTTCTGTTGTATGCACTTGAAAACTGCACTGTACTTAACTGAATGTCCCTTGGCCAAAACTGTGACATATCTTTCAGTTCACTTTCCGATTTTTACTCAACAAACCTGcaattttccttctttctttgtATGTAACAGTTTCATGGACTTTTACCATTAGaagtgtaaaatattattttatattaatttgagaGTTTTACActactttaaattattaatttgcacATTAGATACCAATGTAAATAGtggaaaaaaatagtttattgttaaaaaaacaaaccgaaaaaagaggtgtttgtgttttgtttgtggactAGAGAATGTGATTACATTGGGAATTTCCAAGCCAAGGTTAAATTGTAATatagaaattatttttatattattttcacaaaatgccGCGAAGCAATATTTTGCGCTTTTTCTTATGGACACAGTTGTCACTTTGGTAGGTTATTTTAACTGCAGAGCTGTTAGAGAACAATAACCTTGACAAAAAAAAGGAGATTtgtaaagaaatgttttaagttaTGAATATTTATGTTCCTGGTAGATTCAAACAAGTGTAACAAATCCTACTAATCGAGCTATATCATggggtaaaaaaagaaaagctttatttttcattttgtttttctctatgcatttactttgtatttaatGCAATTGTGCTAAAACCATGTGTTCTCATTGCACCAACATACAGCCTTTTCTTTTACACACTGGGGTGGAAATgcagttctttatttttattttaaattactacatacaaaaactaaaaactggaATAGTAATATGTCAGATTACTTACTTTTGCATTActtacacactttaaaataaggttgtGTGATTCCTGAATCCTGAGGAATACCAtaggattaacacatgaatatctcatgcacttcatctgagttctgatgttaattacatgtgtaacagggttagggttcatgtcCTCAACCTCAGATGATGTGTgtgaggtattgatgttttaatcctgtggtattcatatattaattaggaggaatcacaccaccgtATTTTAAAATGGGACCCAGTTTTCAGATGTGCTCTCAATCTGACAACTGTGTATCTCATACGTTTTAAGGAGAAGTACCTCTGAATTATTCTGTGAGGCgtctgtgtttaaaaatacaaacaagaaaacacagttGACCTTTGTTAGACAAAGAGCTTCAGACCTTCAATGTGCAATAAAATGCACTAGCATTAAAGTAGCTGCTGTACAATAAACACCTCATTAATTGTTACGCAAAACAACGATATTCTTTAGTTTCACAAGGGGGATtgtatgaaataaatcaaatgcgAAGAAATTATGATTGTCTTAGGATAAGAAGCAAATTTTGCAGCACATTTACTGAAAGTGAAGCTTCTAAAAGGACCATGAGATCAGCAAGACAGCATTTACTCTATAGACCTATCAGTGTGTTTGAGAAGAATGATCATTTTACCACTGTCAAGAAGCGTGGAAAAACACTTAATAATATTCAACTCACTTTCTTTCCCCAGAGATGTATGGTTTCAAGCCCATTAAAAAGGTGGGATTGTAAGTGTGagccttttttattaatttaccttTTTCTTGCTGTATGTTGACATGTTTAATATTCCAGTTTAAATCAGAGCTGTTTAAAGAATAAGCCAGTTTCTTATTGTACCTAAATAACTTTCATTGCCTACACCACACAGGCAAATACAGAAGCATGATATCAAGCTTAcgtacccccaccccccccattaAATACTACCAATTATTCTATAGCCAATAAAAGACCTGATGCAGATCATTATTGCAAACTCAGCCTAGTTGCCTGCCAGTGCATAGCATCACCAGTCACTCTATGCTATAAAGAAATTAACATGAAtccaaaaaacaatacatacaatagatagatagatattattATACTATCATATTTGTcatgaaacaaagcaaacccATCTTAGAGGGTACAATGCCAATAAGACTGCTGTTAAGCCTGTGCATTGTGCTCtgatatttgtataattaaagaTTTGACATCCAGTTCAACTGAGTCTATTTAATCAGTCTAAAATGGCATATAATAGACAGTGTACTGAGTTTTAGagtgtgtgccagtgtcagtttaagaaaaataataaaacacattttattggctgttttttattcttttgagGACATACGTCTTTAGATTTCTGTTTGAAGACGTAAGctgtattaaaagcatttttacatGGATCTATTATACGGACCTTCAAAAGCTAAATGAAAGCATTCTCAATAGCCACACCATGTCAAGTGTTTGACTtacatatttctgaaataactacc

Function

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33060 lncRNA upstream 209101 30510535 ~ 30522510 (+) True G26360
TU33009 lncRNA upstream 324964 30402565 ~ 30406647 (+) True G26319
TU32945 lncRNA upstream 928008 29799757 ~ 29803603 (+) True G26262
TU32935 lncRNA upstream 956576 29768193 ~ 29775035 (+) False G26258
TU33144 lncRNA downstream 169840 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 170842 30945303 ~ 30946095 (+) True G26429
TU33147 lncRNA downstream 181177 30955638 ~ 30955893 (+) True G26433
TU33175 lncRNA downstream 325810 31100271 ~ 31100516 (+) True G26458
TU33178 lncRNA downstream 329493 31103954 ~ 31106021 (+) True G26461
AMCG00007806 mRNA upstream 118419 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007802 mRNA upstream 123588 30590214 ~ 30608023 (+) True AMCG00007802
AMCG00007800 mRNA upstream 293478 30429840 ~ 30438133 (+) True AMCG00007800
AMCG00007799 mRNA upstream 302481 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007798 mRNA upstream 330508 30388193 ~ 30401103 (+) True AMCG00007798
AMCG00007809 mRNA downstream 108455 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007808 mRNA downstream 166738 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007816 mRNA downstream 322277 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007813 mRNA downstream 337184 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007818 mRNA downstream 496214 31270675 ~ 31302984 (+) True AMCG00007818
TU32939 other upstream 956576 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 1727838 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2276904 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 2636870 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6537130 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4836655 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7370523 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7394109 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7581468 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7657584 38432045 ~ 38436595 (+) True G27551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048041 False 3043 mRNA 0.54 11 NC_007136.7 34407529 ~ 34458452 (+)
grasscarp (Ctenopharyngodon idella) CI01000330_03505183_03536773.mRNA True 5413 mRNA 0.46 13 CI01000330 3503305 ~ 3537059 (+)