RNA id: AMCG00007808


Basic Information

Item Value
RNA id AMCG00007808
length 2438
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00007808
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30941199 ~ 30943727 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTTTTCTATGCAAGCAACGCTCAGCCAGTGAAAATGCCTGTAAGTTGATacacaaattgcattttatgtCTCTAACTCGTATTTATATTGATTGACACTTGATTACATGTGTATTTACCTTCAATTGAATgagtttttggttgtttgtgaCAGCCTGCACGCGTTTATGGAGCTTGTTGTGGCGGACACATGGCACTGCGCGGGCTGCTCGTGGAAGGGCTGGGCCTGGTGTCGCTCGCATCTGCTGTGAAAGTgtacaaaacatgcattttgtgtAGTTCTAGTTTATGTTTCATGTTTATTGTTATCTTTTTGTTTAACTATGTATTCCCgctcgctttttttttttttttttttagctgggCCTTTGTTAATAATATCCAAGCACAGTGTATtgatatgattaaaatatatatgcagaaaataataattagtatcACTTTATTAGGCTTCCTAATTGAATTCCTGTTAGAGTTAAATGCAAGTGATTTGATTATTGTTCATACATAGAACGATGCATGAAAAAGCAGCTTCGCATCAGGACTCAAAATGTCGTCTGGGAAAGAATCGTCGTTACAATTAGATTTCATCTGCAGTTCTCGGTATTGGAAGATAAAACTGTGTTAAGATTTTCTGTAATAGTGAAGCCttgtggaaatgtgtgttttaggCTTAATTTCGATACTTGGTGTGTAAACTCGTGGCTATGCAAACAGGTGTTCGTGTTGGAGTCTACATCAATATTTCGGATTTCATTTCAGTTGGCTAAAGATCTACTGCATCCTTCTCTTGAAGAAGAGAAGAGACAACATAAGAAGAAAAGATTGGTCCAGAGCCCGAATTCATACTTCATGGATGTGAAATGTCCAGGCTGCTATAAGATCACTACGGTGTTCAGTCATGCCCAGACGGTGGTGCTGTGTGTGGGCTGCTCCACGGTGCTCTGCCAGCCTACAGGAGGGAAAGCAAGGCTCACAGAGGGTAGGTGGGGAATGTCCTGAACAAAGCTCTCATTCACTCTTTGTATCACAGTTGGAATTACTGTGGGGCTTCCTAAATCATTTAAACTCTGTATTTCTTGTAAGTGAAATTTCCATTGCAGAAATGGTTTCCTATCGTTCAACTGAGTGGCAAAACTAATTATACAAATGCaaaggtgtatatatatgtagacaCACAAGCTGTGAAATACCACTAATATGTCTATTGAGGAACCAAACAGCACTAGCAAAATATGCTTCATATTTGTGTGGTAGCAACTCTTCTACACCTACATTAACCCTAGTCAGCAAGAATGTAGCCCATTCTCCTTTGATTTTACTGGAAAGCCCCAAGTTACAGGCTGCTCTTGTAGGGATTGGTCAAGTATAACTTAAATGTTATGGTGAGGATTCAGGAGATACTCTGCCAGTGTGATGAGAAGTGACCCACTATATCTGTCTCTGGACTCCCTATTGCAGTCTGGGCCAGGTTTTGGGTTGCGCTCCAGCCGACCAGAAGTGCTTATCTTGTCAGTGCAATCTGTAAACGTGTATCCTCCTTGCAAAAGGAAAATGACAGCAAGTATTACTGCATTCTTGTTTTGTCAGTGCTTTGTATGGTTCCATGTGTTTttggcttttattttacttggaCAGTGAATCTTGCAACTCTAGGTagtttttaaaatttgaaattgaTACTATATAAACCTTTCAGGTACTTACTTAgtcaattatattataaaagtgcagGTATAATTTCTCACCTAATGTTTTTCAGGttgctctttcagaagaaagCAACATTAAAGGATGAAAATGGAAGTGTCACATTGTACAGAGAAGTTATGTTTCACATCACTGATCAATCAATGCCTTATTAACTATTCATTGATTCCAATGaatgctaattaaaatgtaattatgtgttTGAATGATTCATGGCAGGTTGTTTCTGTTGTGTAATCTGTTCGGTTCTGGAAATAAAGCCTTACATGTGTGCATAAGTCTGTCTCTATTACAGTAGTAATTTAAGcttgattttaaaaatctgGTCTTCCTTCTGTGGTCACAGCCCACTCTAGGGATGTTGGAAGACTTCTTACCCATGTTTCATTGCACAGTATCCATTTGTATTTTCCTGCTGCTCCATTTGTTGAAGCAAAtattaacaattttaaattattagcCTGTATATTATCACGGAGGTTTGCTTGTATGTATTCAACTTGCTCACTCATGAGGCTTGCTTATACTTGCCTATGCATTTTCatagttttgtttattaatatatattctattcCCAAGCACCTGCTTTGAGAATTAACCACAGTAACTCAAAGCTTATTGAATGGTTTACTCCCACATAATGTAAACTTGTACCAAGtaattaaagttatatttaacttactataaacaaatgcaaaattatgAACTTGTGTTCTTAGGATAACAC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33060 lncRNA upstream 418689 30510535 ~ 30522510 (+) True G26360
TU33009 lncRNA upstream 534552 30402565 ~ 30406647 (+) True G26319
TU32945 lncRNA upstream 1137596 29799757 ~ 29803603 (+) True G26262
TU32935 lncRNA upstream 1166164 29768193 ~ 29775035 (+) False G26258
TU33144 lncRNA downstream 574 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 1576 30945303 ~ 30946095 (+) True G26429
TU33147 lncRNA downstream 11911 30955638 ~ 30955893 (+) True G26433
TU33175 lncRNA downstream 156544 31100271 ~ 31100516 (+) True G26458
TU33178 lncRNA downstream 160227 31103954 ~ 31106021 (+) True G26461
AMCG00007809 mRNA upstream 25734 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007805 mRNA upstream 166738 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007806 mRNA upstream 328007 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007802 mRNA upstream 333176 30590214 ~ 30608023 (+) True AMCG00007802
AMCG00007800 mRNA upstream 503066 30429840 ~ 30438133 (+) True AMCG00007800
AMCG00007816 mRNA downstream 153011 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007813 mRNA downstream 167918 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007818 mRNA downstream 326948 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007820 mRNA downstream 361309 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007819 mRNA downstream 381355 31325082 ~ 31339183 (+) True AMCG00007819
TU32939 other upstream 1166164 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 1937426 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2486492 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 2846458 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6746718 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4667389 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7201257 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7224843 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7412202 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7488318 38432045 ~ 38436595 (+) True G27551

Expression Profile