RNA id: AMCG00007809


Basic Information

Item Value
RNA id AMCG00007809
length 5136
RNA type mRNA
GC content 0.51
exon number 27
gene id AMCG00007809
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30882916 ~ 30915465 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCTGACTAGATTCCTCAACAATAGCTCCCCCCATCAGTGCTCTCACAATCAGAGTGATGAAGCTTCATGTCTTGTGGGATTCGATGAGCTTCACAGACTCTGGGAGCAAGCAGCGAGAGGGAACCTGAGCAGACCTCTGCagctggaggagaggagaaacaAAGCCCAGCCTGAGACCACCATaatcacattcaaattcaaatatttattcaccCCTAAGAAGGCCTTCTCTTATGCTCAAAAGGCCCAGAAGGCTTGGATAGAGAAGACCTTTCACAAAAGAGAATGTATCCACATTTTTCCCAACACCAAAGACCCAAATAGATGTTGCTGTGGCCATCTGCTTAATCAACACGTAGCCATCCTCCCCGGCTGCCTGACCAACAAATCCACAGAGGAGAACAACCAACTGGTGCAGGTGGACCCCCAGCCAGAGAAATGGTGCGTCTCCAAACACACGAAGACCTCCCCCACCGACTCCTACGGCATCATCGAGTTCCAAGGAGGAGGCCACAGCAACAAGGCCATGTATATCAGGGTATCATATGACACAAAGCCTGACAACCTGCTTCACCTGATGGTGAAAGACTGGCAGCTGGAGTTGCCCACCCTCCTAATTTCAGTTCATGGAGGCCTTCAGAACTTTGACCTGCAACCCAAGCTCAAGCAAGTCTTTGGGAAAGGCTTAATCAAAGCTGCCATGACAACAGGAGCCTGGATATTCACTAGCGGAGTTAGTACTGGAGTGATCCGCCACGTTGGAGATGCCTTGAAAGACCACTCCTCCAAATCCAGAGGGAAAATCTGTGCCATAGGAATAGCTCCTTGGGGAATAGTGGAGAACAAAGAAGATCTCATTGGGAGAGACGTAACAAGACCCTATCAGACGATGTCCAACCCTCTCAGCAAGCTGTCTCTGCTCAACAACAGTCACTCCCACTTCATCCTGGCTGACGATGGCACTTATGGGAAATATGGGGCAGAGGTCAAGCTGCGACGACAACTAGAAAAGCACATCTCTCTGCAGAAGATCAACACCCGTCTGGGCCAGGGGGTGCCAgttgtgtgtttgattgttgAAGGGGGCCCCAATGTGATCTCCATCGTGCTGGAGAGCCTGCGGGAGGACCCCCCAGTGCCAGTGGTGGTCTGTGATGGAAGTGGAAGAGCTGCGGACATCATCTCATTCGCACACAAATACTCAGAGGAAGCGGGggtGATTAGCGACAGTCTGAGGGATCAGCTCCTGGTCACCATTCAGAAAACATTCAACAACAGCAGATATCAGGCGCAGCAGCTGTTCATGATGCTTATGGAGTGCATGAAGAAGAAGGAGCTCATAACAGTGTTTCGAATGGGCTCAGAAGGACAGCAGGATATCGAGATGTCCATACTGACTGCATTGCTGAAAGGTACCAATGCATCTGCGCCTGACCAGCTGAGCTTGGCTCTCGCCTGGAACCGAGTGGACATCGCCCGCAGTCAGATTTTTGTGTATGGACATCACTGGCCTCCTCTCACCAACCTGGCGGCCAACGAATCTCCATCCAAGGAGCGTGAGAAAGGCCCAGCGGTTACCAAACGCACCACCAAGCACAAGGGCAAGGgcaaaaagaaagggaaaggaaaaggaaaagaggaACCAGAGGAAGAGACGGATCCAAGAAAGATAGAATTGCTTAACTGGGTCAACTCTCTTGAGCAGGCCATGATGGACGCCCTGGTGTTGGATCGAGTGGACTTTGTGAAGCTGTTGATCGAGAATGGGGTGAACATGCATCACTTTCTCACCATTCCCCGGCTTGAAGAACTGTACAATACTAGGCTAGGACCACCAAATACGTTAAATTTTCTTGTCAGGGATGTTAAGAAGGGAAACCTCCCCCCGGACTACCACATCAGTCTGATAGACATCGGGCTGGTTCTGGAGTACCTTATGGGTGGAGCCTACCGCTGTCACTACACCCGGAAAAGTTTCCGCAGCCTCTACAACAACCTGTTTGGACCAAAGAGGCCAAAAGCTCTTAAACTTCTAGGAATGGAGGATGATGAAATGCCAAGCAAGGGacacaaaaagaagaagaagaagaagaaagaggaggagatTGACATTGATGTGGACGACCCCGAGGTCAGCCGATTCCAGTTCCCCTTCCATGAGCTCATGGTTTGGGCCGTGCTGATGAAGCGCCAGAAGATGGCGCTGTTCCTGTGGCAGCGTGGCGAGGAGGCCATGGCCAAGGCCCTGGTGGCCTGCAAGCTGTTCAAATCCATGGCCCACGAGTCCTCAGAGAGCGAGATGGTGGACGACATCTCTCAGGACCTGGACAACAACTCCAAGGAGTTTGGGCAGCTGGCCTACGAGCTACTGGATCAGTCTTACAAGCATGACGAGCAGGTGGCCATGAAGCTGCTGACCTACGAGCTGAAGAACTGGAGTAACTCCACATGTCTGAAACTGGCTGTGGCAGCCAAGCACCGTGACTTCATTGCACACACCTGCAGCCAGATGCTGCTCACAGACATGTGGATGGGCTGCCTGAGGATGCGCAAAAACCCGGGCCTTAGGGTTATTATGGGCATTGTTTTCCCACCCAGCATCCTGTTCCTGGAATTTCGGGGAAACGAGGACCTGTCCTTCCAGACGTCAGCGGAGAATGAGGAAGCAAaggaaaaggaagaagaaagcaAGgatGGTAATCTGGAATCAACCTCAAAGAAAGGGGATGAAGAAGACAGCGATAAGAAGCAAAGGAGAGTCCCTATAGGGACAAAGATTTATGAGTTTTACAATGCCCCCTTTACCAAGTTTTGGTTCTATACTATTTTCTACCTGATGTACTTGATGCTTTTCAACTACGTCATCCTGGTGAAGATGGAGCGTTGGCCCACCCTGCAGGAATGGATTGTCATCTCCTACATCATCACCCTGGCTCTGGAGAAAGTCAGAGAGATCTTGATGTCGGAGCCGGGCAAACTGAAGCAGAAGATCAATGTTTGGCTGCAGGAGTACTGGAACATCACCGACATGGTGGCGATCTCTGTGTTCCTGATGGGCCTGCTCCTCCGGCTGCAGAATCAACCTTACATGGGCTACGGCCGCGTCATATACTGCGTGGATATAATTTTCTGGTACATCCGGGTGCTGGACATCTTTGGAGTGAACAAGTATCTGGGACCCTATGTCATGATGATCGGGAAAATGATGATTGACATGCTGTACTTTGTGGTGATCATGCTGGTGGTGCTGATGAGCTTCGGCGTGGCGCGCCAGGCCATCCTGCACCCTGACGAGGAGCCCACCTGGCGTCTCGCCCGCAACATCTTCTACATGCCCTACTGGATGATCTATGGAGAGGTGTTTGCGGACCAGATAGACCGTAAGACTAGAATTCATACTCCCTGTGGAGATAACCTGTATGATGAAGATGGGAAAAAGATGCCACCCTGTATCCCCGGGGCCTGGCTCACTCCTGCTATCATGGCCTGTTATTTACTGGTTGCCAACATCCTCCTTGTGAACCTCCTCATTGCAGTCTTTAATAACACTTTCTTCGAAGTGAAGTCCATCTCAAACCAGGTGTGGAAGTTCCAGCGTTATCAGCTCATCATGACCTTCCACGACCGGCCTGTGCTTCCTCCCCCCCTCATTATCTTCAGTCACATTTACATCATCGTGAAGCGCATCTGCTGCCGCTGCAAGAGGAGGCAAGAAGGCGACCTAGATGAGAGCGATCGAGGACTAAAGCTGATCCTTTCCGAAGAGGAGATGAAGAAACTACATGAGTTTGAAGAGCAGTGTGTGGAGGAATATTTCCAGGAGAAGGAAGATGAACAGCTGTCTTCCAATGATGAGCGCATTCGAGTTACTTCAGAAAGGGTTGAAAACATGTCCATGCGTCTGGAGGAGGTCAACGAGAGGGAGCATTTCATGAAGGCCTCCCTGCAGACAGTGGACCTGCGGCTGGCCCAGCTTGAGGAGTTCTCGGGGCGGATGTTGAATGCTGTGGAGAAGCTGGCCGGCGTGGACAAGTCTGAACTGTCCCGATCCCGGGCCTCCTCAGAGTGTGATCCTGGCTTCCTTCTACGCCAGAGCAGCATCAACAGCTCAGATGGCTACAGCATCTATCGCTATCATGTGGACAGCGAGGAGCACTTGTATGATGAGAATGGAGCCTCAGCATCACCTCGGGGACTGAGACCCCCTTCGAAGGCCAAGGAAGAGAAGGAGGTTGTGGACAGAAAGATGCAGCTCAAGCCAGAGTACCAAGGCAGCTTCTATCACACATCCAGTCCCACGACCTCCAAGGAATATGGCCAGACATTAGGAGTTGTTCCAGATTCCAGGCAACCAAGtgtagacattttaatttcctcctcTAGTGATACGAAAGCTCAGCCAGATGATCCTGATTTTCAGAGAGAACCAAAACCTTTGCAGTCTGTGGTGAATGGTGAGGACACTCCACGGGTTGTACTTCGAAACACCGGCTTAGAAAGAGCACAACTGGAAGCCACAGTCTCCTACCCCTTGGAAAAGTCCAAAGCTTTGCGGTACTATCCATCACAAGTCTATAATGCTTCTCCACCTACTACAATAAAGTCCAGAAGTAGCATCATATTTACCCCAGCAGCAGGGGCAGCTGAAGATGAAGGCAACTGGGCCATGGACTACCAGTCCTTAATGGACCAGGTTACCAAGTCTCCGATAGGACGGTGGACAGCTTGTTTCGAGTACAAAGTTCACCCCAGCTCGTTTGGGAAGCCGCCCCAAGTTTCCATTGTGAGGCCATCTCAAGAGGACCCTATAGGCACAGAGGCCGAGTCACAGGCCGAGCTGAAGCAGCTGGTCACAGACACAATGGATGATGGCGAAACTTCAGGGGACAGAATGGACACAGACCACCTGTTTGTAGCCGAGGACAGGATTTATCCATCTCTCAGGTCAAAGAGTTTGAATGCCAACCCGAGGAAGGTGAGAGCCAAGGGGGACAGCACAGAGAAGCTCAGAGGAGCCAGCAGTGTCAAAAACATTGTGGTGGCTTGTGGCAATACAACGGAGGAACAGGAGGTGGAGACAAAGGAGAATGAAGTGCTCAAGCAGAACTCATCTACTGAAACAGACTGCTGA

Function

GO: NA

KEGG:

id description
K04976 TRPM1; transient receptor potential cation channel subfamily M member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33060 lncRNA upstream 360406 30510535 ~ 30522510 (+) True G26360
TU33009 lncRNA upstream 476269 30402565 ~ 30406647 (+) True G26319
TU32945 lncRNA upstream 1079313 29799757 ~ 29803603 (+) True G26262
TU32935 lncRNA upstream 1107881 29768193 ~ 29775035 (+) False G26258
TU33144 lncRNA downstream 28836 30944301 ~ 30945248 (+) True G26430
TU33143 lncRNA downstream 29838 30945303 ~ 30946095 (+) True G26429
TU33147 lncRNA downstream 40173 30955638 ~ 30955893 (+) True G26433
TU33175 lncRNA downstream 184806 31100271 ~ 31100516 (+) True G26458
TU33178 lncRNA downstream 188489 31103954 ~ 31106021 (+) True G26461
AMCG00007805 mRNA upstream 108455 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007806 mRNA upstream 269724 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007802 mRNA upstream 274893 30590214 ~ 30608023 (+) True AMCG00007802
AMCG00007800 mRNA upstream 444783 30429840 ~ 30438133 (+) True AMCG00007800
AMCG00007799 mRNA upstream 453786 30409031 ~ 30429130 (+) True AMCG00007799
AMCG00007808 mRNA downstream 25734 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007816 mRNA downstream 181273 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007813 mRNA downstream 196180 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007818 mRNA downstream 355210 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007820 mRNA downstream 389571 31305036 ~ 31317396 (+) True AMCG00007820
TU32939 other upstream 1107881 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 1879143 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2428209 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 2788175 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6688435 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4695651 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7229519 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7253105 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7440464 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7516580 38432045 ~ 38436595 (+) True G27551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048045 True 4785 mRNA 0.49 25 NC_007136.7 34581494 ~ 34615463 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_04510794_04529529.mRNA True 4566 mRNA 0.49 22 CI01000026 4510626 ~ 4529529 (-)