RNA id: AMCG00007813


Basic Information

Item Value
RNA id AMCG00007813
length 4415
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00007813
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31111645 ~ 31136247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGCCAGTGCGCAGCCTCAGCAGCGGAGCGGCGCCGCACAGGTAGCGACGCACTGAGCTGTTGAGCTGCTGCTCGTAGCGATTCGACCCCATCTCTTCAGCGCTGCTCGCCCGGTTCAATTGTGCACAATGACATGTGTTGCTCTTTGGATGCTGCTGCTCAGCCTTGTTTTAGTTTCCAGCACTGAGCTGACGTTTGAATTACCCGATAATGACAAACAGTGCTTCTACGAAGAACTTGAAAAAGGAGTCAAGTTTAACATCGATTATcaaGTTATTGCTGGAGGCAACTATGATGTTGACTGCTTTGTGACGGATGCAGTGGATAATGTCCTGTATCACGAAAAGAAGAAGCAGTATGACAGCTTCACTCACATCACAGAAACGAAAGGTGTTTACAAGGTCTGCTTCAGCAACGAGTTCTCCACCTTCTCCCACAAGATTGTATACCTCGACTTCCGAAGTGGAGACGAGCGACCTCTCCTCCCCGACATGAACAGAGCCACGGCCTTAACCCAGATGGAGTCGGCTTGCCTTTCCCTCCACGAAATTCTCAAGACAATGTCGGACTCTCAGACCTGGTACCGGCTCAGGGAGGCCCAGGACCGGCTCCGCGCTGAGGAGATCCACGACCGCGTGTCCTATTGGTCCATGGGAGAGACCTTCATCCTCTTCGTGGTCAGCATCGGCCAGGTGGTCATGCTCAAGAGCTTCTTTACAGACAAGAAAGCCAGCGTGGCCAGCAGCACGTAGACATTGCCATGGCAGGTCCGCTCTTCTGACTTGCACTTGAGGCATAGCAGGAGGGGAAAGGCtagggtaaaaaataaaataaaataaatcagtagtACTTCTGTCACCCAGGGCCCACAGGTCAATGTGTCTCTGTTTCCTCAGTTAGATAATCAGTCCGTGCAGTTTGTAATGAATTAACTACAAAGATCCACTCAGGCTCTCGGTGACCAGAGTTGTGTAGCACACATGTTGTGATCccatcaaaaacattttttttaaagcttgtcAAACAGTGACTATAACTTGGCTATTGTAGCATTTCTTTACTGAAGAGTGCgcgtgcatgcgtgtgcgtgcgttTCTTTACCAAAAGACATCCCTTCCACTTTACAGCTACGCAATTATTTATGCCTCAATTCATTTTACTTGCTATATTCTTGATGTCTCTTTTGTACTTCACAGACTTTGATAAACAATCTGAGACACTAATCTGCCTATATCTGCCTTTGttgtcaatgtttttatgttgtaaaaGTAGAGAACCATGTCCCTGGTATGTTTACAAAGATACATTCTTATAAGAAGGGACAAATTACAATGCCAAAAACATCTTTCAAAACTTGAATGAGCATTTAATTGTGATTTGCCACATTACAAAACAATCCTGCTGTTGTTAGGTCACCTACCCACTGATTACAAGTTCAGTTCCTAAGTTAGTGTTGATTCCATATTTTCAGTAATAAGGGAACCAAAATATTGTGCTTTGTATGATTTCCAGTGTCTTTTGTTTACTGCCTTTGAATAGTGTTACATatctcagttttctttttctctttagtGTTTACTGATAAGAGACAAGGGTGAAGTTTTGTCTgtagatgttatttttaaataattagtaCTCCCTACCAATCCTCCCAACCACTGGGATCATGAAgaaatacaactatttaaaatgGGGGGCTCCTCCTGGCTTTTATAAGACTAAGATACTTGGTAATGTGTAGTTTGGAAAAACTggttttatttcacacacacacccacacactgagAGTGTAGTTGGTTATTTGTCAAACTGCtgattttaagatgttttaccCAGAAGGAAAGCTGTAGTACCCTGTTGTTCATGTAGAATACACAAGAGCGCATGGAGGTAATGGTTGAGTCATTGCACAATGGAAAtggtagaaaaacaacaaccaaaaaacacactttttgtttCTGGTCACTCTGTTGCAATGAGGGTGTTGGTCCACTGAGTGGGGGTGTTCAAACCCATCTGCCTTTCACATTCATTACAAAATGGGACCTATGCACATAGACAGCATTTCCCATTACTCTGTGTATACCACACTTTAAAGCAGGTTTAAGTAATCAAATCTTACCTtttcaaaattgtttattttacttcgCTTGAATAGGAGTATGTTTGTTGCCTTTGTTAACGCTCCTGCTCGGTCATTTGTTTCCTGcggtgtgtgttttctgtgctcaGTGCTTGTTAGAGGTGTAGGGGGGTAGGGGTGGGGTGTCTGAATCTTTAGGAAGCTGAaggattcttttttttcttctaaaaagaCAACTACCTTTCCACTTACTTGACCTTACCTGTTGGATTTCCTGCTGGGTCAGCACTTACCGGGCAGACGAAAAATAAAGTACCATAATCCATTGCGCAGCGGCAACCCTCTCTCCTTACAGACGGTGACGTGGGCCGGAGTCTGAGATGGGGAGGCGCTCCGCTGTTATATCGCACGGAGCGGCAGTCCCGCTCGGCCTTTCTTCGTCCGGAGTGTAACCGTTTCACAGTAGCAGCTGCAAGGGCAACCGTGAACCATGGCAGGGTACCTCAAGGTCCTCAGCTCCCTCTCCAGATCCGCCACCGCACTGGCGAAAAACCCCGCCGTGCTGGCCCCCGCAGCCGGACACAGCCCGCAGCAGAGGAACTTGGTGAGCCGGGGAGAGCCGGTGAAAGCCGGTGCCAATGAGGAGGGCCGGGCGACCATCTTGCACGAAAAAAGCCGGCTGGCGCTGAAACGCTTCTGTATGAATGGGAAACGCACAGCAGCGCGGGATGACTCACCCAATGCTGACAAGCGTATCAAGGTGGCCCAGCCTGTGGTGGAAATGGACGGTGATGAGATGACTCGTATCATCTGGGAGTTCATCAAGGAGAAGCTCATTTTGTCCAACGTGGATGTGGAGCTGAAGTATTTTGACCTGGGTCTTCCGTACCGTGACCAGACGAATGACCAAGTCACCATCGACTCTGCTATTGCAACCCAGAAGTACAGTGTTGCTGTTAAATGTGCCACCATCACTCCCGATGAGGCCAGAGTTGAAGAGTTCAATCTGAAGAAGATGTGGAAGAGCCCCAATGGAACCATCAGGAACATCCTGGGCGGGACAGTCTTCCGTGAGCCAATTATCTGCAAGAACATTCCCCGTCTTGTCCCTGGTTGGACGCAGGCCATCACCATTGGCCGTCATGCGTTCGGTGACCAGtACAAAGCAACAGACTTTGTGGTGAGCAAACCAGGAAAATTCAAGATGGTGTTCACTCCCACAGACGGGACCAAGGCCTCCGAGTGGGAGGTGTACAACTTCCCTGGGGGTGGCTGCGGAATGGGCATGTACAACACGGATGAGTCCATCTCTGGGTTTGCTCACAGCTGCTTCCAGTACGCCATCCAGAAGAAGTGGCCCCTGTACATGAGCACCAAGAACACCATCCTGAAGGCATACGATGGGCGCTTCAAGGACATCTTCCAGGAAATCTTTGAGAAGAACTACAAGCCTGAGTTTGACAAGCTGAAGATCTGGTACGAGCACCGGCTCATTGATGACATGGTGGCTCAGGTGCTGAAGTCCTCGGGTGGCTTTGTTTGGGCCTGCAAGAACTACGATGGGGATGTGCAGTCTGACATCCTGGCTCAGGGCTTCGGCTCCCTGGGACTGATGACTTCCGTGCTGGTGTGCCCTGATGGTAAGACCATCGAGGCGGAGGCAGCCCACGGCACTGTCACCCGGCACTACCGTGAGCACCAGAAGGGCCGGTCAACAAGCACCAACCCCATTGCCAGTATTTTTGCCTGGACCAAGGGACTGGAGCACCGTGGAAAGCTTGACGGCAACCCCGATTTGATCAGGTTCTCGCAGACACTGGAGCGTGTGTGCGTCGAGACGGTGGAAAGTGGAGTCATGACCAAGGACCTCGCTGGCTGCATCCATGGCCTTGCAAACTGTAAACTGAACGAGCACTATGTGAACACTACAGACTTCCTCGATGCAATCAAGAATAACCTGGACAGAGCCCTGGGCAAGTGAGAAACATCAAGACAAGATGCTGGAAAATTAAGTTTTctattggttttgtttgtttttttacctcatttttaacttttaaaaggTCATGATGATAACCACAAACATCTTGATTTGAAGGGTAaaaattttagtattttaatatagAAGTTTCTGTACAGACTGACTTAGTGTACAGTTTCAATGTATTGTACTGTCGACTTACTCCACTCCCTCATACCTTGTCCAAGGTCCTGCTTTTGTAATGTGAAGTACACCTcagatttgtaatttatatacCATGAAACAACTTGATAAATGGCCATTGCAAGCAATATATATTTCCCTAATAAAACTCAGTACCTTGTTGTAA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33180 lncRNA upstream 4396 31106714 ~ 31107249 (+) True G26463
TU33179 lncRNA upstream 5021 31106414 ~ 31106624 (+) True G26462
TU33178 lncRNA upstream 5624 31103954 ~ 31106021 (+) True G26461
TU33175 lncRNA upstream 11129 31100271 ~ 31100516 (+) True G26458
TU33147 lncRNA upstream 155752 30955638 ~ 30955893 (+) True G26433
TU33208 lncRNA downstream 81863 31218110 ~ 31218322 (+) True G26483
TU33260 lncRNA downstream 277907 31414154 ~ 31424691 (+) False AMCG00007827
TU33371 lncRNA downstream 645391 31781638 ~ 31781891 (+) True G26625
TU33398 lncRNA downstream 686493 31822740 ~ 31822973 (+) True G26645
TU33452 lncRNA downstream 1486013 32622260 ~ 32622530 (+) True G26698
AMCG00007816 mRNA upstream 13288 31096738 ~ 31098357 (+) True AMCG00007816
AMCG00007808 mRNA upstream 167918 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007809 mRNA upstream 196180 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007805 mRNA upstream 337184 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007806 mRNA upstream 498453 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007818 mRNA downstream 134428 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007820 mRNA downstream 168789 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007819 mRNA downstream 188835 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007827 mRNA downstream 284963 31421210 ~ 31440378 (+) True AMCG00007827
AMCG00007825 mRNA downstream 359692 31495939 ~ 31497811 (+) True AMCG00007825
TU32939 other upstream 1336610 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2107872 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2656938 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3016904 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6917164 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4474869 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7008737 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7032323 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7219682 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7295798 38432045 ~ 38436595 (+) True G27551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026561 True 975 mRNA 0.49 6 NC_007129.7 26096814 ~ 26101800 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_00862608_00869073.mRNA True 1507 mRNA 0.49 9 CI01000013 862418 ~ 869073 (+)