RNA id: AMCG00007815


Basic Information

Item Value
RNA id AMCG00007815
length 3128
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00007815
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31103778 ~ 31111738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGTCGAATCGCTACGAGCAGCAGCTCAACAGCTCAGTGCGTCGCTACCTGTGCGGCGCCGCTCCGCTGCTGAGGCTGCGCACTGGCGGCGGtttgtCCATTGCGTCTGTACCGGACACCCGCCGGAGGGCACCAGACATCTCCCTTATGCGAGAGGCGAGGAGACGTGTGACAGTGAAGGACGACGCGGATCAGCCCGGAAGTGTCTTTATTACCGACCCGGCACAGCATGCAGGCCGCACTGAGTACCGAGGCAGAGTGGGTGTGGTTGCACTTCGGAGGTGGGTGGCAGGTGGCAAGTGTCGGAGCAAAGCCAGGCTGACTGGGAAAACGGTGCTGATCACCGGAGCAAACACCGGCATCGGCAAGGAGACGGCCAGGGACTTGGCATGCAGGGGTATCATGATGTGCCCCAAGTGGAAGACAGAGGATGGCTTTGAGATGCAGTTTGGGGTCAACCATTTGGGTCACTTCCTGTTGACAAACTGTCTACTGGACCTGCTGAAGAAGTCCAGCCCTAGCCGCATCATTTCCGTGTCCAGCCTGGCTCATGACAAAGGTCAGATTTATTTTGATGACATTAACCTAGAAAAAGACTACGACCCTCGCAAGAGCTATGGCCAGAGCAAGTTGGCCAATGTCCTCTTCACCCGGGAGCTGGCAGCCCGATTGAAGGGTACAGGGGTGACAGCAAACAGCTTGCACCCTGGGGTGATTCGCACTGAGCTGGGGAGACACGTGTTTCCCACCTTACCTTGGTGGAAGAGGGTAATTGCCCTCCCAATGATCATCCTGCTATTCAAGACCCCATGGGAGGGTGCTCAGACCACCATCCACTGTGCCGTGGATGAGAGTCTGGAGAATGTCAGCGGTGTGTATTTCAGTGATTGCGCTCCAAAAGAAGTGGCGCCCCAGGCCCGGAACGACGCGGCTGCCAGGAGACTGTGGGATCTGAGTGCCACTATGGTGAGCCTCTCCTAATGGATTCCCGTATCTTGCTGTGCACCAGTTGTGTATGACCCTGCTCTCCACTGGTCTGTCTTCATCCACTTCAGAGAGCGGCTGTGTGTCCTGGAGCCCAATCTGCACAGTGCAAAGCAACTCCACAGCTGTGTATTGATCAATGAAAAAGCTTGATTTTTCTGTTTGAACCTGAAGTGATTAATTGGTAATGGGATTTCATTGGGTGTGTTTTTTCAGTCAACAATAATATCTGTTTTTGAAGCTGAAGCTTTCCAATTCTATTAATTTACCTAATGTTAAAAATACCATAATGATAATACTGGTAACAGTGCTTCTTTCTGAGGATATAGATTAGATATGCATTGGTGCAACAGGTATGGAATGTATCCCCAAATGTGTTGCTTCACCATATTAGAGAGATGCAGAGGAAAGTGATagacttaaatgtatttactttttaagcACTTCCAGACTTCCATGCTGTATTCAGTAAATATGTGTACAATATTAACACTGCAATCTCGGGTTGTCATCAAgagtaaaaactgaaatattttataagATATTAGCTATGTTTCCATCATGAATACTTACACGCAAAACACTCAGGAATGGGACAGTTGGGGAAACTGTTAACAAGCAATATGACCGGCAGGGGATGATAGAGATTTATCTTGTACAATTAatgaccatttaaaaaacattttcaagtgTATTTTAGTTGGATATGTTGCCAGGGGTTTGGGTGCATGACACCATGGTGTCAccaaagcattaaaaaacaaaagtaattctCAATTTCAGACCTCTGAGCATGCTGTCACCTCTGAAACCTCACCTGTATATTGTGTGCAGGTTAACACATCAGAATGAGcgatatttgccaaaataaaacaagtcttGGTGCAGTCTGTCATGTACGTGTACAACGACATTTGACAAGATAATTTGTCTGCTGGACTTTATATGAAGGATAAAGATTGATGGAGAGCCCGAATGGTACGGAAAGCATCTTTTCATGAATGTAAACGTATCTTATGGTTTTTTAAGCTTGTGATGTCATTGCATTCAGCGGTTTGTGTGCTCCATTTTTGTTTGAACTGCAGTAAGTCCGCTAGCAGTTTTTTCGACATTGTGATGGAATCATAGCTATAGATGTAATTTTTCTACACATGCTTCATGCTATGTTGTGATTTGTCTTTGCTATTAAACTCTGAATATTGTTTTTGCTGGGTGGCAGTCCTTTCTTACTTCTGCATATGTTGtcctgaagcattttaaatcagatttagATCTGGCTAGACcaatgcattattttcaaaatcagttGTTTGTAATTTTAAGGAATGTTGATGAAGTGTGTCAATATGCCATTATCATGTGAAATTGGACCTCTTTGCCCCTGCGTCACATTTCTCAGGGTATTGCATGTTGCTCTGATTCCATGCCTTTATTGCATCACCACTGTGCACCACCAAACTGGCCTCCAGCCTTCATATTTCCACATTTTACAGTGTGTACCATTCACCCCGTTGGCAATCTCTCTTGTTTTTACATATGTTTATCTACTCCATGCGTTTGTGTACTTGTGCATGCTTTAATTGCAGGCTGACTCACTAGATCAACGACCTCTTGAGTTCACTTCGTAAGGAACCAGCGAACAGACCCGCAGAGATGTCTCTCTTATGTCTGACTTTTCATAATAATCCCAGACTGTGGACATGCTAGTTTATGCTTTGCCACTGGTCAGAAGTAAAGTGTCAGAAAACCAAAACCCATGACCTTCCCTGCCccaatttttaaacaaatgctgcTTTACAGTATAATAAACATCCTCTAATTTATTCCACAATCTCGCAACTATGAGCTCTTCTGTACATTACTATGCATAACAAACTGCTTAGAAAGCTGGGATTTTGAGAGGCTCCTTCTAATTTAATGTTATGGatgcatatttttctttcattttattcactgtaatggacaataaatgtttttttctattgtgaTCTTACCTTTGTAATACTGTGTATCTGCAGATCACTGTATACTACTGATTGttaaatctgcatttctttcgATAGGCttatgctaaataataataataatagcagcatTGCTCTAGATTAGATTTGACTTAAAGATTAAAAAGTCTTCTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33130 lncRNA downstream 199883 30903669 ~ 30903895 (-) True G26416
TU33115 lncRNA downstream 228400 30800411 ~ 30875378 (-) True G26403
TU33076 lncRNA downstream 492085 30610218 ~ 30611693 (-) True G26370
TU33039 lncRNA downstream 649150 30404998 ~ 30454628 (-) True G26342
TU33227 lncRNA upstream 109689 31221427 ~ 31246649 (-) True AMCG00007817
TU33228 lncRNA upstream 132802 31244540 ~ 31246649 (-) False AMCG00007817
TU33235 lncRNA upstream 227107 31338845 ~ 31342792 (-) False AMCG00007822
TU33236 lncRNA upstream 227107 31338845 ~ 31342792 (-) False AMCG00007822
TU33340 lncRNA upstream 574033 31685771 ~ 31686432 (-) True G26598
AMCG00007812 mRNA downstream 121758 30963044 ~ 30982020 (-) True AMCG00007812
AMCG00007811 mRNA downstream 155852 30944612 ~ 30947926 (-) True AMCG00007811
AMCG00007810 mRNA downstream 179278 30916360 ~ 30924500 (-) True AMCG00007810
AMCG00007807 mRNA downstream 273162 30810794 ~ 30830616 (-) True AMCG00007807
AMCG00007803 mRNA downstream 464402 30619418 ~ 30639376 (-) True AMCG00007803
AMCG00007814 mRNA upstream 24728 31136466 ~ 31144404 (-) True AMCG00007814
AMCG00007817 mRNA upstream 80272 31192010 ~ 31227639 (-) False AMCG00007817
AMCG00007821 mRNA upstream 210996 31322734 ~ 31323081 (-) True AMCG00007821
AMCG00007822 mRNA upstream 226978 31338716 ~ 31342706 (-) True AMCG00007822
AMCG00007823 mRNA upstream 243622 31355360 ~ 31358391 (-) True AMCG00007823
TU31949 other downstream 5472186 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 5838827 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 6835857 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 7131113 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 10631074 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 3757697 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 6128351 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 6383173 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 6455879 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 6459219 37570957 ~ 37571488 (-) True G27439

Expression Profile