RNA id: AMCG00007816


Basic Information

Item Value
RNA id AMCG00007816
length 1620
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00007816
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31096738 ~ 31098357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGATATGATGGAGCTGCGGACAGACGGGAACTCCCTGCTGAAGGCGGTGTGGCTGCGGAGGCTGAGACTCACCCGGCTGCTGCTGGAGGGGGGGGCCTATATCAACGAGAGCAACGAGAGAGGCGAGACGCCACTCATGATCGCCTGTATGTCCAAGCACACTGACCAGCAGAGCGTCAGCAAAGTCAAAATGGCCAAGTACCTGCTAGAGAACAAAGCTGATCCCAACATCCAGGACAAGATGGGCAGGACGGCCCTGATGCACGCCTGCAGTGAGAGGGCTGGCCACGAGGTTGTGGCCCTGCTGCTGGTGAACGGCGCCGACCCCAGCTTGGAAGACCGCTCAGGGGCCTCGGCGCTCGTCTACGCCATAAATGCAGATGATAAGGAGACACTAAGGCTCCTCTTGGATGCCTGCAAAGCCAAGGGCAAAGAGGTCATCATCATCACTACTGACAAGTCTCCCTCTGGCACCAAAACCACAAAGCAGTACCTGAATGTTCCGCCCTCCCCCGAGCTGGAAGAGCGCTATTCCCCGGCACTCTGCACCTCCCCCTCCGACATTGACCTCAAAACGTCCCCCTCACCTACCACCGAGAAGCAGCATGAGTCCATATTCAGCTTCCAGAGCAAACGCTCGGGGGGGTGTGGCAGTACTGCCCCCAGTGTGGTCACCAAACTACCCACCGAGCCCGTCTCCCCCACCAGGAAGCTCTGCAACCCGAAACGAGCACGACTGCCCCAGCTAAAGCGACTGCAGTCAGAGCCCTGGGGACTGATTGCGCCATCCGTCCTAGCGGCAGCAGCGGCATATGAGGAGAATAAGAGGGCCATGTCAGATGAGGATGTGGTGGTGGGAGCCATGAACGGGCTGTCCCTCCCCAAGAGAGCGCCTTTGTCGCGGCACAACAGCATAGAAAGTAAAGAGGGTCCATCTTCCTTTCCCACAGTGGGGGACCAGTCTTCGATGACGTCTTCGACACCAGCATCCCGGAAAACATCTTATGAGAAATCACACGCCCAGCATCAACCCTTGGCGCGGCGCAGCACCGTGCCCACAGAACAAGACAACACTGGTCACTCTGCCTCCGGTCCCGCCAGCTTAAGGGATACAATGTACAGGAGGCGGCTGGGCAACGAGCATTACGATTCAGACTCCCAGTTGTACTCAGACTCAGCCTCAGGCTCGCTGGATTCGGCCAAGGTTCCCATGGAAAGGAGGAAACACAACACATCCCCCTTGACACTACTCACAAGCTCTCGGGAGTCTTTAGACAGCATTCCCAGCACATCCCCAGGCACGGCACGCCGCAGGGCCCCAGGTCTTCTGGAGAGACGTGGTTCCGGGACCCTGTTGCTGGACCACATATCCCACACTCGCCCAGGATACCTGCCACCTCTGAACAtcaaccccaacccccccatccCGGACATCAGAGCAAGCAGCAAACCCTCCTCCCCTCTCACCACCTGCGTCAGGTCCATAGTTCCTGTAGCACCCAGCTCACCAAAGAGAAGCGACCTGAAGTCCAAAAAGAAACTAGTGAGGAGGCATTCTATGCAAGTCGAACAAATGAAACAGCTCTCTGATTTCGAGGAACTTGCCATCCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33147 lncRNA upstream 140845 30955638 ~ 30955893 (+) True G26433
TU33143 lncRNA upstream 150643 30945303 ~ 30946095 (+) True G26429
TU33144 lncRNA upstream 151490 30944301 ~ 30945248 (+) True G26430
TU33060 lncRNA upstream 574228 30510535 ~ 30522510 (+) True G26360
TU33009 lncRNA upstream 690091 30402565 ~ 30406647 (+) True G26319
TU33175 lncRNA downstream 1914 31100271 ~ 31100516 (+) True G26458
TU33178 lncRNA downstream 5597 31103954 ~ 31106021 (+) True G26461
TU33179 lncRNA downstream 8057 31106414 ~ 31106624 (+) True G26462
TU33180 lncRNA downstream 8357 31106714 ~ 31107249 (+) True G26463
TU33208 lncRNA downstream 119753 31218110 ~ 31218322 (+) True G26483
AMCG00007808 mRNA upstream 153011 30941199 ~ 30943727 (+) True AMCG00007808
AMCG00007809 mRNA upstream 181273 30882916 ~ 30915465 (+) True AMCG00007809
AMCG00007805 mRNA upstream 322277 30731611 ~ 30774461 (+) True AMCG00007805
AMCG00007806 mRNA upstream 483546 30610218 ~ 30613192 (+) True AMCG00007806
AMCG00007802 mRNA upstream 488715 30590214 ~ 30608023 (+) True AMCG00007802
AMCG00007813 mRNA downstream 13288 31111645 ~ 31136247 (+) True AMCG00007813
AMCG00007818 mRNA downstream 172318 31270675 ~ 31302984 (+) True AMCG00007818
AMCG00007820 mRNA downstream 206679 31305036 ~ 31317396 (+) True AMCG00007820
AMCG00007819 mRNA downstream 226725 31325082 ~ 31339183 (+) True AMCG00007819
AMCG00007827 mRNA downstream 322853 31421210 ~ 31440378 (+) True AMCG00007827
TU32939 other upstream 1321703 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 2092965 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 2642031 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 3001997 28083822 ~ 28094741 (+) True G25822
TU31514 other upstream 6902257 24192221 ~ 24194481 (+) True AMCG00007631
TU33841 other downstream 4512759 35611116 ~ 35620801 (+) False AMCG00007873
TU34416 other downstream 7046627 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 7070213 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 7257572 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 7333688 38432045 ~ 38436595 (+) True G27551

Expression Profile